-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_441

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 251, 320
Sorry, prediction snap_scaffold_441-snap.1-T1 fails validation.
(CGT)	 AG	251-320	GT	CGG
(ATC)	 AG	571-756	GT	CAG
(ACA)	 AG	2341-2472	GT	TCG
(ATG)	 AG	4047-4156	GT	CCG
(TGG)	 AG	4688-5260	GT	ATG
(ACC)	 AG	6869-6971	AG	AGA
-recovered snap_scaffold_441-snap.1-T1, initial, 4047, 4156
-recovered snap_scaffold_441-snap.1-T1, terminal, 6869, 6971
-recovered snap_scaffold_441-snap.1-T1, internal, 251, 320
-recovered snap_scaffold_441-snap.1-T1, internal, 571, 756
-recovered snap_scaffold_441-snap.1-T1, internal, 2341, 2472
-recovered snap_scaffold_441-snap.1-T1, internal, 4047, 4156
-recovered snap_scaffold_441-snap.1-T1, internal, 4688, 5260

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61853-T1
Couldn't classify 237, 245
Sorry, prediction GeneMark_model.107638_t fails validation.
(AGA)	 AG	237-245	GT	GGG
(GGG)	 AG	283-336	GT	GGG
(GGA)	 AG	387-401	GT	GAG
(AAT)	 AG	464-499	GT	AGG
(GGA)	 AG	528-600	TT	GAT
-recovered GeneMark_model.107638_t, terminal, 528, 600
-recovered GeneMark_model.107638_t, internal, 237, 245
-recovered GeneMark_model.107638_t, internal, 283, 336
-recovered GeneMark_model.107638_t, internal, 387, 401
-recovered GeneMark_model.107638_t, internal, 464, 499
Couldn't classify 6533, 6563
Sorry, prediction GeneMark_model.107636_t fails validation.
(ATG)	 TG	2778-2957	GT	AGG
(ACC)	 AG	4314-4330	GT	ATG
(ACA)	 AG	4491-4538	GT	GGG
(GTT)	 AG	4568-4645	GT	GAG
(AGG)	 AG	4674-4679	GT	AGG
(GAA)	 AG	4704-4835	GT	GAG
(GGG)	 AG	4861-4956	GT	AGG
(GAG)	 AG	5001-5012	GT	GAG
(GAG)	 AG	5038-5064	GT	GAG
(GGA)	 AG	5103-5161	GT	GAG
(CCC)	 AG	6106-6151	GT	CTG
(GGG)	 AG	6178-6306	GT	ATG
(GGG)	 AG	6330-6368	GT	GAG
(GAC)	 AG	6389-6511	GT	GGG
(AGG)	 AG	6533-6563	GT	TTG
-recovered GeneMark_model.107636_t, initial, 2778, 2957
add_exon() Sorry, GeneMark_model.107636_t 4568-4645-terminal-1 is invalid.
-recovered GeneMark_model.107636_t, terminal, 4568, 4645
-recovered GeneMark_model.107636_t, internal, 4314, 4330
-recovered GeneMark_model.107636_t, internal, 4491, 4538
-recovered GeneMark_model.107636_t, internal, 4568, 4645
-recovered GeneMark_model.107636_t, internal, 4674, 4679
-recovered GeneMark_model.107636_t, internal, 4704, 4835
-recovered GeneMark_model.107636_t, internal, 4861, 4956
-recovered GeneMark_model.107636_t, internal, 5001, 5012
-recovered GeneMark_model.107636_t, internal, 5038, 5064
-recovered GeneMark_model.107636_t, internal, 5103, 5161
-recovered GeneMark_model.107636_t, internal, 6106, 6151
-recovered GeneMark_model.107636_t, internal, 6178, 6306
-recovered GeneMark_model.107636_t, internal, 6330, 6368
-recovered GeneMark_model.107636_t, internal, 6389, 6511
-recovered GeneMark_model.107636_t, internal, 6533, 6563
Valid prediction for Augustus_model.g41113.t1
Couldn't classify 1650, 2320
Sorry, prediction snap_scaffold_441-snap.2-T1 fails validation.
(CTG)	 AG	1650-2320	GT	GGG
(GTG)	 AG	2724-2957	GT	AGG
(CTC)	 AG	6221-6415	GG	GAG
-recovered snap_scaffold_441-snap.2-T1, terminal, 6221, 6415
-recovered snap_scaffold_441-snap.2-T1, internal, 1650, 2320
-recovered snap_scaffold_441-snap.2-T1, internal, 2724, 2957

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6971, rend_intergenic: 567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6981
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6971, rend_intergenic: 567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support