-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_440

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1341, 1435
Couldn't classify 4289, 4378
Sorry, prediction snap_scaffold_440-snap.1-T1 fails validation.
(GGG)	 AG	1341-1435	GT	GTG
(AAA)	 AG	1813-1919	GT	CGG
(ACG)	 AG	2034-2119	GT	AGG
(GCT)	 AG	4289-4378	GT	GGG
-recovered snap_scaffold_440-snap.1-T1, internal, 1341, 1435
-recovered snap_scaffold_440-snap.1-T1, internal, 1813, 1919
-recovered snap_scaffold_440-snap.1-T1, internal, 2034, 2119
-recovered snap_scaffold_440-snap.1-T1, internal, 4289, 4378
Valid prediction for GeneMark_model.107635_t
Valid prediction for GlimmerHMM_glimmerT_61852-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5725, 5789
Sorry, prediction GeneMark_model.107634_t fails validation.
(ATG)	 AT	5336-5361	GT	GGG
(GTG)	 AG	5383-5396	GT	AGG
(GGC)	 AG	5426-5535	GT	AAG
(CTC)	 AG	5656-5695	GT	CAG
(AAG)	 AG	5725-5789	GT	GGG
-recovered GeneMark_model.107634_t, initial, 5336, 5361
-recovered GeneMark_model.107634_t, internal, 5383, 5396
-recovered GeneMark_model.107634_t, internal, 5426, 5535
-recovered GeneMark_model.107634_t, internal, 5656, 5695
-recovered GeneMark_model.107634_t, internal, 5725, 5789
Valid prediction for Augustus_model.g41112.t1
Valid prediction for snap_scaffold_440-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4378, rend_intergenic: 1809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6983
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4378, rend_intergenic: 1809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support