-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_438

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107632_t
Valid prediction for Augustus_model.g41110.t1
Valid prediction for GlimmerHMM_glimmerT_61847-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_438-snap.2-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_438-snap.1-T1
Valid prediction for snap_scaffold_438-snap.4-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_438-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6894, 6983
Sorry, prediction GeneMark_model.107631_t fails validation.
(ATG)	 CC	5678-5722	GT	CCG
(ACC)	 AG	5763-5932	GT	ACG
(ACG)	 AG	6105-6668	GT	CGG
(CCT)	 AG	6697-6727	GT	CCG
(CTG)	 AG	6760-6858	GT	GGG
(CCT)	 AG	6894-6983	GT	ACG
-recovered GeneMark_model.107631_t, initial, 5678, 5722
-recovered GeneMark_model.107631_t, internal, 5763, 5932
-recovered GeneMark_model.107631_t, internal, 6105, 6668
-recovered GeneMark_model.107631_t, internal, 6697, 6727
-recovered GeneMark_model.107631_t, internal, 6760, 6858
-recovered GeneMark_model.107631_t, internal, 6894, 6983
Valid prediction for GlimmerHMM_glimmerT_61848-T1
Valid prediction for Augustus_model.g41111.t1
Valid prediction for GlimmerHMM_glimmerT_61846-T1
Valid prediction for Augustus_model.g41109.t1
Valid prediction for GlimmerHMM_glimmerT_61849-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61849-T1 1624-2086-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7000
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support