-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_436

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107623_t
Valid prediction for GeneMark_model.107625_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 392, 415
Sorry, prediction GeneMark_model.107627_t fails validation.
(GGG)	 AG	392-415	GT	GGG
(AGA)	 AG	439-495	GT	TGG
(CAC)	 AG	575-622	GT	AGG
(GGA)	 AG	648-671	GT	AGG
(GGG)	 AG	697-702	GT	GAG
(TGA)	 AG	739-756	GT	GGG
(TGA)	 AG	782-800	AT	GAA
-recovered GeneMark_model.107627_t, terminal, 697, 702
-recovered GeneMark_model.107627_t, terminal, 782, 800
-recovered GeneMark_model.107627_t, internal, 392, 415
-recovered GeneMark_model.107627_t, internal, 439, 495
-recovered GeneMark_model.107627_t, internal, 575, 622
-recovered GeneMark_model.107627_t, internal, 648, 671
-recovered GeneMark_model.107627_t, internal, 697, 702
-recovered GeneMark_model.107627_t, internal, 739, 756
Valid prediction for GeneMark_model.107624_t
Valid prediction for GeneMark_model.107626_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7006
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support