-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_435

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41107.t1
Couldn't classify 6881, 6964
Sorry, prediction Augustus_model.g41108.t1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3096	GT	AGG
(CAC)	 AG	3854-3902	GT	AGG
(GTG)	 AG	4112-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
(GAA)	 AG	6606-6672	GT	AGG
(GTG)	 AG	6881-6964	GT	AGG
-recovered Augustus_model.g41108.t1, initial, 1722, 1893
-recovered Augustus_model.g41108.t1, internal, 2310, 2379
-recovered Augustus_model.g41108.t1, internal, 2686, 2746
-recovered Augustus_model.g41108.t1, internal, 2995, 3096
-recovered Augustus_model.g41108.t1, internal, 3854, 3902
-recovered Augustus_model.g41108.t1, internal, 4112, 4265
-recovered Augustus_model.g41108.t1, internal, 6103, 6241
-recovered Augustus_model.g41108.t1, internal, 6473, 6528
-recovered Augustus_model.g41108.t1, internal, 6606, 6672
-recovered Augustus_model.g41108.t1, internal, 6881, 6964
Couldn't classify 6473, 6528
Sorry, prediction GlimmerHMM_glimmerT_61844-T1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3112	GT	CAG
(GTG)	 AG	3649-3729	GT	AGG
(CAG)	 AG	4109-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
-recovered GlimmerHMM_glimmerT_61844-T1, initial, 1722, 1893
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 2310, 2379
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 2686, 2746
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 2995, 3112
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 3649, 3729
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 4109, 4265
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 6103, 6241
-recovered GlimmerHMM_glimmerT_61844-T1, internal, 6473, 6528
Couldn't classify 6881, 6964
Sorry, prediction snap_scaffold_435-snap.2-T1 fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3096	GT	AGG
(TGT)	 AG	3431-3452	GT	CTG
(GTG)	 AG	3649-3729	GT	AGG
(GTG)	 AG	4112-4265	GT	AGG
(CAT)	 AG	6103-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
(GAA)	 AG	6606-6672	GT	AGG
(GTG)	 AG	6881-6964	GT	AGG
-recovered snap_scaffold_435-snap.2-T1, initial, 1722, 1893
-recovered snap_scaffold_435-snap.2-T1, internal, 2310, 2379
-recovered snap_scaffold_435-snap.2-T1, internal, 2686, 2746
-recovered snap_scaffold_435-snap.2-T1, internal, 2995, 3096
-recovered snap_scaffold_435-snap.2-T1, internal, 3431, 3452
-recovered snap_scaffold_435-snap.2-T1, internal, 3649, 3729
-recovered snap_scaffold_435-snap.2-T1, internal, 4112, 4265
-recovered snap_scaffold_435-snap.2-T1, internal, 6103, 6241
-recovered snap_scaffold_435-snap.2-T1, internal, 6473, 6528
-recovered snap_scaffold_435-snap.2-T1, internal, 6606, 6672
-recovered snap_scaffold_435-snap.2-T1, internal, 6881, 6964
Couldn't classify 6892, 7000
Sorry, prediction GeneMark_model.107622_t fails validation.
(ATG)	 GG	1722-1893	GT	TGG
(CCG)	 AG	2310-2379	GT	GAG
(AGT)	 AG	2686-2746	GT	AGG
(GTG)	 AG	2995-3096	GT	AGG
(GTC)	 AG	3808-3871	GT	AGG
(CAG)	 AG	4109-4265	GT	AGG
(AGG)	 AG	5867-5872	GT	CAG
(AGG)	 AG	5896-5907	GT	GGG
(GGA)	 AG	5937-5943	GT	AGG
(GTG)	 AG	6110-6241	GT	CGG
(CAT)	 AG	6473-6528	GT	AGG
(CTA)	 AG	6892-7000	GT	GGG
-recovered GeneMark_model.107622_t, initial, 1722, 1893
-recovered GeneMark_model.107622_t, internal, 2310, 2379
-recovered GeneMark_model.107622_t, internal, 2686, 2746
-recovered GeneMark_model.107622_t, internal, 2995, 3096
-recovered GeneMark_model.107622_t, internal, 3808, 3871
-recovered GeneMark_model.107622_t, internal, 4109, 4265
-recovered GeneMark_model.107622_t, internal, 5867, 5872
-recovered GeneMark_model.107622_t, internal, 5896, 5907
-recovered GeneMark_model.107622_t, internal, 5937, 5943
-recovered GeneMark_model.107622_t, internal, 6110, 6241
-recovered GeneMark_model.107622_t, internal, 6473, 6528
-recovered GeneMark_model.107622_t, internal, 6892, 7000

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_435-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4693, rend_intergenic: 1722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7009
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4693, rend_intergenic: 1722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support