-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_433

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107618_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41105.t1
Couldn't classify 947, 1143
Sorry, prediction GeneMark_model.107619_t fails validation.
(ACA)	 AG	947-1143	GT	CTG
(GGG)	 AG	1957-1983	GT	ACG
(ACC)	 AG	2122-2231	GT	CGG
(AGT)	 AG	2361-2427	AC	GAA
-recovered GeneMark_model.107619_t, terminal, 2361, 2427
-recovered GeneMark_model.107619_t, internal, 947, 1143
-recovered GeneMark_model.107619_t, internal, 1957, 1983
-recovered GeneMark_model.107619_t, internal, 2122, 2231
Couldn't classify 34, 237
Sorry, prediction snap_scaffold_433-snap.1-T1 fails validation.
(GTG)	 AG	34-237	GT	CAG
(GTA)	 AG	955-1351	GT	AGG
(GGA)	 AG	1555-1642	GT	AGG
(GAA)	 AG	1815-1869	GT	AGG
(GGG)	 AG	1957-1983	GT	ACG
(ACC)	 AG	2122-2231	GT	CGG
(AGT)	 AG	2361-2427	AC	GAA
-recovered snap_scaffold_433-snap.1-T1, terminal, 2361, 2427
-recovered snap_scaffold_433-snap.1-T1, internal, 34, 237
-recovered snap_scaffold_433-snap.1-T1, internal, 955, 1351
-recovered snap_scaffold_433-snap.1-T1, internal, 1555, 1642
-recovered snap_scaffold_433-snap.1-T1, internal, 1815, 1869
-recovered snap_scaffold_433-snap.1-T1, internal, 1957, 1983
-recovered snap_scaffold_433-snap.1-T1, internal, 2122, 2231
Couldn't classify 519, 866
Sorry, prediction GlimmerHMM_glimmerT_61842-T1 fails validation.
(GTG)	 AG	519-866	GT	AGG
(ACA)	 AG	947-1351	GT	AGG
(GGA)	 AG	1555-1642	GT	AGG
(CGT)	 AG	2100-2235	GC	GAG
-recovered GlimmerHMM_glimmerT_61842-T1, terminal, 2100, 2235
-recovered GlimmerHMM_glimmerT_61842-T1, internal, 519, 866
-recovered GlimmerHMM_glimmerT_61842-T1, internal, 947, 1351
-recovered GlimmerHMM_glimmerT_61842-T1, internal, 1555, 1642
-recovered GlimmerHMM_glimmerT_61842-T1, internal, 2100, 2235
Couldn't classify 1234, 1351
Sorry, prediction pasa_asmbl_43678.p1 fails validation.
(CAC)	 TA	1234-1351	GT	AGG
(GGA)	 AG	1555-1642	GT	AGG
(GAA)	 AG	1815-1869	GT	AGG
(GGG)	 AG	1957-2231	GT	CGG
(AGT)	 AG	2361-2427	AC	GAA
-recovered pasa_asmbl_43678.p1, terminal, 2361, 2427
-recovered pasa_asmbl_43678.p1, internal, 1555, 1642
-recovered pasa_asmbl_43678.p1, internal, 1815, 1869
-recovered pasa_asmbl_43678.p1, internal, 1957, 2231

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7025
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support