-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_431

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 634, 776
Couldn't classify 5070, 5733
Sorry, prediction snap_scaffold_431-snap.2-T1 fails validation.
(GGC)	 AG	634-776	GT	TAG
(GAG)	 AG	5070-5733	GT	AAG
-recovered snap_scaffold_431-snap.2-T1, internal, 634, 776
-recovered snap_scaffold_431-snap.2-T1, internal, 5070, 5733
Valid prediction for GlimmerHMM_glimmerT_61839-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61839-T1 5070-5737-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 781, 1011
Sorry, prediction snap_scaffold_431-snap.3-T1 fails validation.
(ACA)	 AG	781-1011	GT	GTG
(CTG)	 AG	1323-1961	GT	GTG
(AAC)	 AG	2765-3230	TA	AAT
-recovered snap_scaffold_431-snap.3-T1, terminal, 2765, 3230
-recovered snap_scaffold_431-snap.3-T1, internal, 781, 1011
-recovered snap_scaffold_431-snap.3-T1, internal, 1323, 1961
Couldn't classify 804, 845
Sorry, prediction GeneMark_model.107616_t fails validation.
(AGG)	 AG	804-845	GC	AGG
(GAA)	 AG	868-1021	TG	GAT
-recovered GeneMark_model.107616_t, terminal, 868, 1021
-recovered GeneMark_model.107616_t, internal, 804, 845
Couldn't classify 6201, 6434
Sorry, prediction snap_scaffold_431-snap.1-T1 fails validation.
(ATG)	 TG	3661-3668	GT	ATG
(GAT)	 AG	6201-6434	GT	AGG
-recovered snap_scaffold_431-snap.1-T1, initial, 3661, 3668
-recovered snap_scaffold_431-snap.1-T1, internal, 6201, 6434
Valid prediction for GeneMark_model.107615_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3378, rend_intergenic: 634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5733, rend_intergenic: 3809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7038
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3378, rend_intergenic: 634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5733, rend_intergenic: 3809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support