-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_430

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107613_t
Couldn't classify 6950, 6993
Sorry, prediction GeneMark_model.107614_t fails validation.
(ATG)	 AG	6751-6845	GT	GGG
(AAA)	 AG	6877-6924	GT	TGG
(GGA)	 AG	6950-6993	GT	TGG
-recovered GeneMark_model.107614_t, initial, 6751, 6845
-recovered GeneMark_model.107614_t, internal, 6751, 6845
-recovered GeneMark_model.107614_t, internal, 6877, 6924
-recovered GeneMark_model.107614_t, internal, 6950, 6993
Couldn't classify 6751, 6993
Sorry, prediction snap_scaffold_430-snap.2-T1 fails validation.
(ATG)	 CC	1697-1799	GT	ACG
(GCC)	 AG	3679-3798	GT	CAG
(ATG)	 AG	6751-6993	GT	TGG
-recovered snap_scaffold_430-snap.2-T1, initial, 1697, 1799
add_exon() Sorry, snap_scaffold_430-snap.2-T1 6751-6993-initial-1 is invalid.
-recovered snap_scaffold_430-snap.2-T1, initial, 6751, 6993
-recovered snap_scaffold_430-snap.2-T1, internal, 3679, 3798
-recovered snap_scaffold_430-snap.2-T1, internal, 6751, 6993

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107612_t
Valid prediction for snap_scaffold_430-snap.1-T1
Couldn't classify 232, 341
Sorry, prediction snap_scaffold_430-snap.3-T1 fails validation.
(CCC)	 AG	232-341	GT	GGG
(GGC)	 AG	3268-3384	AA	GAA
-recovered snap_scaffold_430-snap.3-T1, terminal, 3268, 3384
-recovered snap_scaffold_430-snap.3-T1, internal, 232, 341
Couldn't classify 232, 341
Sorry, prediction GlimmerHMM_glimmerT_61838-T1 fails validation.
(CCC)	 AG	232-341	GT	GGG
(GGA)	 AG	3758-3949	GT	TTG
(GCT)	 AG	5217-5352	GC	AAG
-recovered GlimmerHMM_glimmerT_61838-T1, terminal, 5217, 5352
-recovered GlimmerHMM_glimmerT_61838-T1, internal, 232, 341
-recovered GlimmerHMM_glimmerT_61838-T1, internal, 3758, 3949
-recovered GlimmerHMM_glimmerT_61838-T1, internal, 5217, 5352

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7041
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6993, rend_intergenic: 3658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support