-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_427

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107606_t
Couldn't classify 1361, 1384
Sorry, prediction GeneMark_model.107605_t fails validation.
(GGA)	 AG	1361-1384	GT	GGG
(GTC)	 AG	1786-1806	GT	CTG
(GCA)	 AG	1905-1940	GT	GGG
(GAG)	 AG	1970-1984	GT	GTG
(GCA)	 AG	2008-2046	GT	CAG
(AGG)	 AG	2090-2228	GG	GAG
-recovered GeneMark_model.107605_t, terminal, 2090, 2228
-recovered GeneMark_model.107605_t, internal, 1361, 1384
-recovered GeneMark_model.107605_t, internal, 1786, 1806
-recovered GeneMark_model.107605_t, internal, 1905, 1940
-recovered GeneMark_model.107605_t, internal, 1970, 1984
-recovered GeneMark_model.107605_t, internal, 2008, 2046
Valid prediction for GlimmerHMM_glimmerT_61833-T1
Valid prediction for GlimmerHMM_glimmerT_61834-T1
Couldn't classify 1168, 1258
Sorry, prediction Augustus_model.g41100.t1 fails validation.
(TTC)	 AG	1168-1258	GT	CCG
(TCT)	 AG	1723-1852	AT	AAA
-recovered Augustus_model.g41100.t1, terminal, 1723, 1852
-recovered Augustus_model.g41100.t1, internal, 1168, 1258

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4621, 4762
Couldn't classify 5220, 5321
Sorry, prediction snap_scaffold_427-snap.1-T1 fails validation.
(CTG)	 AG	4621-4762	GT	AGG
(CAT)	 AG	5220-5321	GT	ATG
-recovered snap_scaffold_427-snap.1-T1, internal, 4621, 4762
-recovered snap_scaffold_427-snap.1-T1, internal, 5220, 5321

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7057
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support