-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_426

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 91, 174
Sorry, prediction GeneMark_model.107603_t fails validation.
(AGG)	 AG	91-174	GT	AGG
(CGA)	 AG	213-224	GT	AGG
(GGA)	 AG	1142-1156	GT	GAG
(GGG)	 AG	1187-1273	GT	AGG
(GAG)	 AG	1295-1312	GT	GGG
(GTG)	 AG	1341-1371	GA	AAG
-recovered GeneMark_model.107603_t, terminal, 1341, 1371
-recovered GeneMark_model.107603_t, internal, 91, 174
-recovered GeneMark_model.107603_t, internal, 213, 224
-recovered GeneMark_model.107603_t, internal, 1142, 1156
-recovered GeneMark_model.107603_t, internal, 1187, 1273
-recovered GeneMark_model.107603_t, internal, 1295, 1312
Couldn't classify 1099, 1312
Sorry, prediction snap_scaffold_426-snap.2-T1 fails validation.
(ACA)	 AG	1099-1312	GT	GGG
(TGG)	 AG	2225-2350	GT	TGG
(GAG)	 AG	2671-2814	GT	CCG
(GTG)	 AG	2849-2864	GT	GGG
(GAA)	 AG	6020-6128	GT	GGG
(CCC)	 AG	6570-6615	CA	GAC
-recovered snap_scaffold_426-snap.2-T1, terminal, 6570, 6615
-recovered snap_scaffold_426-snap.2-T1, internal, 1099, 1312
-recovered snap_scaffold_426-snap.2-T1, internal, 2225, 2350
-recovered snap_scaffold_426-snap.2-T1, internal, 2671, 2814
-recovered snap_scaffold_426-snap.2-T1, internal, 2849, 2864
-recovered snap_scaffold_426-snap.2-T1, internal, 6020, 6128

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61832-T1
Couldn't classify 702, 791
Sorry, prediction GeneMark_model.107604_t fails validation.
(AGA)	 AG	702-791	GT	AAG
(ACC)	 AG	980-995	GT	AGG
(AAG)	 AG	1106-1131	GT	GCG
(AGG)	 AG	3037-3213	GT	CAG
(AAT)	 AG	4551-4654	GT	GGG
(CGG)	 AG	4703-4898	GT	AAG
(AAG)	 AG	4931-4939	GT	AGG
(GGG)	 AG	4980-4986	AG	GAA
-recovered GeneMark_model.107604_t, terminal, 4980, 4986
-recovered GeneMark_model.107604_t, internal, 702, 791
-recovered GeneMark_model.107604_t, internal, 980, 995
-recovered GeneMark_model.107604_t, internal, 1106, 1131
-recovered GeneMark_model.107604_t, internal, 3037, 3213
-recovered GeneMark_model.107604_t, internal, 4551, 4654
-recovered GeneMark_model.107604_t, internal, 4703, 4898
-recovered GeneMark_model.107604_t, internal, 4931, 4939
Valid prediction for Augustus_model.g41099.t1
Couldn't classify 6484, 6627
Sorry, prediction snap_scaffold_426-snap.1-T1 fails validation.
(ATG)	 GG	903-1000	GT	AGG
(AGG)	 AG	4532-4602	GT	AGG
(CGG)	 AG	4703-4939	GT	AGG
(TCG)	 AG	6484-6627	GT	GAG
-recovered snap_scaffold_426-snap.1-T1, initial, 903, 1000
-recovered snap_scaffold_426-snap.1-T1, internal, 4532, 4602
-recovered snap_scaffold_426-snap.1-T1, internal, 4703, 4939
-recovered snap_scaffold_426-snap.1-T1, internal, 6484, 6627

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6160, rend_intergenic: 1099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7062
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6160, rend_intergenic: 1099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support