-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107601_t
Valid prediction for GeneMark_model.107599_t
Valid prediction for snap_scaffold_425-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107600_t
Couldn't classify 142, 154
Sorry, prediction GeneMark_model.107602_t fails validation.
(GTG)	 AG	142-154	GT	GGG
(GCA)	 AG	258-368	GT	CAG
(AAA)	 AG	391-411	GT	GAG
(CGG)	 AG	930-1099	GT	CAG
(CCT)	 AG	1791-1890	GT	GGG
(GGC)	 AG	2319-2424	AA	AAA
-recovered GeneMark_model.107602_t, terminal, 2319, 2424
-recovered GeneMark_model.107602_t, internal, 142, 154
-recovered GeneMark_model.107602_t, internal, 258, 368
-recovered GeneMark_model.107602_t, internal, 391, 411
-recovered GeneMark_model.107602_t, internal, 930, 1099
-recovered GeneMark_model.107602_t, internal, 1791, 1890
Couldn't classify 3533, 3657
Sorry, prediction GlimmerHMM_glimmerT_61831-T1 fails validation.
(GCT)	 AG	3533-3657	GT	CTG
(GAG)	 AG	3755-3853	CA	GAC
-recovered GlimmerHMM_glimmerT_61831-T1, terminal, 3755, 3853
-recovered GlimmerHMM_glimmerT_61831-T1, internal, 3533, 3657
Couldn't classify 1044, 1131
Sorry, prediction snap_scaffold_425-snap.1-T1 fails validation.
(GCT)	 AG	1044-1131	GT	CGG
(CTG)	 AG	1476-1849	GT	TGG
(GCT)	 AG	3533-3657	GT	CTG
(TCT)	 AG	4288-4358	GT	GGG
(GGC)	 AG	6619-6661	AC	GAA
-recovered snap_scaffold_425-snap.1-T1, terminal, 6619, 6661
-recovered snap_scaffold_425-snap.1-T1, internal, 1044, 1131
-recovered snap_scaffold_425-snap.1-T1, internal, 1476, 1849
-recovered snap_scaffold_425-snap.1-T1, internal, 3533, 3657
-recovered snap_scaffold_425-snap.1-T1, internal, 4288, 4358

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6031, rend_intergenic: 1269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7074
-exon list size: 44


building trellis

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34.8    
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43.5    
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50.0    
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58.7    
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63.0    
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84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6031, rend_intergenic: 1269  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support