-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_424

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 362, 437
Sorry, prediction Augustus_model.g41098.t1 fails validation.
(TCT)	 AG	362-437	GT	AGG
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6222	GT	GAG
-recovered Augustus_model.g41098.t1, terminal, 6127, 6222
-recovered Augustus_model.g41098.t1, internal, 362, 437
-recovered Augustus_model.g41098.t1, internal, 4144, 4259
-recovered Augustus_model.g41098.t1, internal, 5192, 5242
-recovered Augustus_model.g41098.t1, internal, 5367, 5514
-recovered Augustus_model.g41098.t1, internal, 6127, 6222
Valid prediction for GeneMark_model.107597_t
Couldn't classify 6127, 6189
Sorry, prediction GlimmerHMM_glimmerT_61830-T1 fails validation.
(ATG)	 CG	5254-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered GlimmerHMM_glimmerT_61830-T1, initial, 5254, 5514
-recovered GlimmerHMM_glimmerT_61830-T1, internal, 6127, 6189
Couldn't classify 362, 437
Couldn't classify 6127, 6189
Sorry, prediction snap_scaffold_424-snap.1-T1 fails validation.
(TCT)	 AG	362-437	GT	AGG
(GTT)	 AG	614-694	GT	ACG
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered snap_scaffold_424-snap.1-T1, internal, 362, 437
-recovered snap_scaffold_424-snap.1-T1, internal, 614, 694
-recovered snap_scaffold_424-snap.1-T1, internal, 4144, 4259
-recovered snap_scaffold_424-snap.1-T1, internal, 5192, 5242
-recovered snap_scaffold_424-snap.1-T1, internal, 5367, 5514
-recovered snap_scaffold_424-snap.1-T1, internal, 6127, 6189
Couldn't classify 4144, 4259
Couldn't classify 6127, 6189
Sorry, prediction pasa_asmbl_43666.p2 fails validation.
(GAC)	 AG	4144-4259	GT	AGG
(GAA)	 AG	5192-5242	GT	AGG
(GTT)	 AG	5367-5514	GT	ATG
(CAC)	 AG	6127-6189	GT	ACG
-recovered pasa_asmbl_43666.p2, internal, 4144, 4259
-recovered pasa_asmbl_43666.p2, internal, 5192, 5242
-recovered pasa_asmbl_43666.p2, internal, 5367, 5514
-recovered pasa_asmbl_43666.p2, internal, 6127, 6189
Valid prediction for GlimmerHMM_glimmerT_61829-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5830, 6076
Sorry, prediction GeneMark_model.107596_t fails validation.
(ATG)	 GC	4069-4074	GT	AGG
(AGA)	 AG	4098-4159	GT	AGG
(AGG)	 AG	4185-4196	GT	AGG
(GGA)	 AG	4220-4233	GT	AGG
(GGA)	 AG	4257-4270	GT	AGG
(AGA)	 AG	4294-4307	GT	AGG
(GGA)	 AG	4331-4344	GT	AGG
(GGA)	 AG	4368-4381	GT	AGG
(GGA)	 AG	4405-4418	GT	AGG
(AGA)	 AG	4442-4455	GT	AGG
(AGA)	 AG	4479-4492	GT	AGG
(GGA)	 AG	4516-4529	GT	AGG
(AGG)	 AG	4555-4566	GT	AGG
(AGA)	 AG	5527-5556	GT	CTG
(ACC)	 AG	5830-6076	GT	CAG
-recovered GeneMark_model.107596_t, initial, 4069, 4074
-recovered GeneMark_model.107596_t, internal, 4098, 4159
-recovered GeneMark_model.107596_t, internal, 4185, 4196
-recovered GeneMark_model.107596_t, internal, 4220, 4233
-recovered GeneMark_model.107596_t, internal, 4257, 4270
-recovered GeneMark_model.107596_t, internal, 4294, 4307
-recovered GeneMark_model.107596_t, internal, 4331, 4344
-recovered GeneMark_model.107596_t, internal, 4368, 4381
-recovered GeneMark_model.107596_t, internal, 4405, 4418
-recovered GeneMark_model.107596_t, internal, 4442, 4455
-recovered GeneMark_model.107596_t, internal, 4479, 4492
-recovered GeneMark_model.107596_t, internal, 4516, 4529
-recovered GeneMark_model.107596_t, internal, 4555, 4566
-recovered GeneMark_model.107596_t, internal, 5527, 5556
-recovered GeneMark_model.107596_t, internal, 5830, 6076
Couldn't classify 11, 129
Sorry, prediction GeneMark_model.107598_t fails validation.
(GAG)	 AG	11-129	GT	CCG
(TAA)	 AG	153-255	GT	ACG
(TCC)	 AG	364-387	AG	AGA
-recovered GeneMark_model.107598_t, terminal, 364, 387
-recovered GeneMark_model.107598_t, internal, 11, 129
-recovered GeneMark_model.107598_t, internal, 153, 255
Couldn't classify 6245, 6410
Sorry, prediction snap_scaffold_424-snap.2-T1 fails validation.
(ATG)	 AC	1697-1914	GT	GGG
(GGA)	 AG	3860-3930	GT	AGG
(TCG)	 AG	6245-6410	GT	CGG
-recovered snap_scaffold_424-snap.2-T1, initial, 1697, 1914
-recovered snap_scaffold_424-snap.2-T1, internal, 3860, 3930
-recovered snap_scaffold_424-snap.2-T1, internal, 6245, 6410

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6189, rend_intergenic: 668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7077
-exon list size: 77


building trellis

1.3    
2.5    
3.8    
5.1    
6.3    
7.6    
8.9    
10.1    
11.4    
12.7    
13.9    
15.2    
16.5    
17.7    
19.0    
20.3    
21.5    
22.8    
24.1    
25.3    
26.6    
27.8    
29.1    
30.4    
31.6    
32.9    
34.2    
35.4    
36.7    
38.0    
39.2    
40.5    
41.8    
43.0    
44.3    
45.6    
46.8    
48.1    
49.4    
50.6    
51.9    
53.2    
54.4    
55.7    
57.0    
58.2    
59.5    
60.8    
62.0    
63.3    
64.6    
65.8    
67.1    
68.4    
69.6    
70.9    
72.2    
73.4    
74.7    
75.9    
77.2    
78.5    
79.7    
81.0    
82.3    
83.5    
84.8    
86.1    
87.3    
88.6    
89.9    
91.1    
92.4    
93.7    
94.9    
96.2    
97.5    
98.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6189, rend_intergenic: 668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support