-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_423

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 173
Couldn't classify 6923, 7006
Sorry, prediction Augustus_model.g41097.t1 fails validation.
(GCT)	 AG	55-173	GT	AGG
(CAG)	 AG	671-878	GT	AGG
(GGC)	 AG	3932-4058	GT	AGG
(AAG)	 AG	5072-5121	GT	AGG
(CTG)	 AG	6180-6270	GT	CCG
(ATC)	 AG	6923-7006	GT	AGG
-recovered Augustus_model.g41097.t1, internal, 55, 173
-recovered Augustus_model.g41097.t1, internal, 671, 878
-recovered Augustus_model.g41097.t1, internal, 3932, 4058
-recovered Augustus_model.g41097.t1, internal, 5072, 5121
-recovered Augustus_model.g41097.t1, internal, 6180, 6270
-recovered Augustus_model.g41097.t1, internal, 6923, 7006
Valid prediction for GlimmerHMM_glimmerT_61828-T1
Couldn't classify 55, 173
Couldn't classify 6923, 7006
Sorry, prediction snap_scaffold_423-snap.1-T1 fails validation.
(GCT)	 AG	55-173	GT	AGG
(CAG)	 AG	671-986	GT	GGG
(GGC)	 AG	3932-4058	GT	AGG
(AAT)	 AG	4456-4471	GT	AGG
(AAG)	 AG	5072-6129	GT	TGG
(ATC)	 AG	6923-7006	GT	AGG
-recovered snap_scaffold_423-snap.1-T1, internal, 55, 173
-recovered snap_scaffold_423-snap.1-T1, internal, 671, 986
-recovered snap_scaffold_423-snap.1-T1, internal, 3932, 4058
-recovered snap_scaffold_423-snap.1-T1, internal, 4456, 4471
-recovered snap_scaffold_423-snap.1-T1, internal, 5072, 6129
-recovered snap_scaffold_423-snap.1-T1, internal, 6923, 7006
Couldn't classify 6931, 7015
Sorry, prediction GeneMark_model.107595_t fails validation.
(ATG)	 TA	6560-6595	GT	TGG
(GTG)	 AG	6931-7015	GT	AGG
-recovered GeneMark_model.107595_t, initial, 6560, 6595
-recovered GeneMark_model.107595_t, internal, 6931, 7015
Couldn't classify 55, 173
Sorry, prediction GeneMark_model.107593_t fails validation.
(GCT)	 AG	55-173	GT	AGG
(TCG)	 AG	674-878	GT	AGG
(AGC)	 AG	913-986	GT	GGG
(GGC)	 AG	3503-3527	GT	AGG
(GGC)	 AG	3932-4058	GT	AGG
(AGG)	 AG	4349-4377	GT	TGG
(AAT)	 AG	4456-4484	GT	GAG
(AGC)	 AG	4546-4560	GC	GAG
(CGA)	 AG	4584-4626	GC	GAG
-recovered GeneMark_model.107593_t, terminal, 4584, 4626
-recovered GeneMark_model.107593_t, internal, 55, 173
-recovered GeneMark_model.107593_t, internal, 674, 878
-recovered GeneMark_model.107593_t, internal, 913, 986
-recovered GeneMark_model.107593_t, internal, 3503, 3527
-recovered GeneMark_model.107593_t, internal, 3932, 4058
-recovered GeneMark_model.107593_t, internal, 4349, 4377
-recovered GeneMark_model.107593_t, internal, 4456, 4484
-recovered GeneMark_model.107593_t, internal, 4546, 4560
-recovered GeneMark_model.107593_t, internal, 4584, 4626

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6108, 6196
Sorry, prediction snap_scaffold_423-snap.2-T1 fails validation.
(ATG)	 CG	969-2057	GT	ATG
(AGA)	 AG	2292-2466	GT	TTG
(ACA)	 AG	3598-3660	GT	AGG
(TCC)	 AG	6108-6196	GT	AGG
-recovered snap_scaffold_423-snap.2-T1, initial, 969, 2057
-recovered snap_scaffold_423-snap.2-T1, internal, 2292, 2466
-recovered snap_scaffold_423-snap.2-T1, internal, 3598, 3660
-recovered snap_scaffold_423-snap.2-T1, internal, 6108, 6196

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7006, rend_intergenic: 892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7087
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 7006, rend_intergenic: 892  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support