-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_422

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41095.t1
add_exon() Sorry, Augustus_model.g41095.t1 939-1135-terminal-1 is invalid.
Couldn't classify 6421, 6675
Sorry, prediction GeneMark_model.107592_t fails validation.
(ATG)	 TC	6311-6314	GT	GTG
(GCC)	 AG	6341-6396	GT	CTG
(GCC)	 AG	6421-6675	GT	TGG
-recovered GeneMark_model.107592_t, initial, 6311, 6314
-recovered GeneMark_model.107592_t, internal, 6341, 6396
-recovered GeneMark_model.107592_t, internal, 6421, 6675
Couldn't classify 939, 1088
Couldn't classify 6421, 6675
Sorry, prediction snap_scaffold_422-snap.2-T1 fails validation.
(AGC)	 AG	939-1088	GT	TGG
(AGG)	 AG	3058-3140	GT	GGG
(GCT)	 AG	6322-6396	GT	CTG
(GCC)	 AG	6421-6675	GT	TGG
-recovered snap_scaffold_422-snap.2-T1, internal, 939, 1088
-recovered snap_scaffold_422-snap.2-T1, internal, 3058, 3140
-recovered snap_scaffold_422-snap.2-T1, internal, 6322, 6396
-recovered snap_scaffold_422-snap.2-T1, internal, 6421, 6675

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41096.t1
Valid prediction for GlimmerHMM_glimmerT_61827-T1
Couldn't classify 6040, 6190
Sorry, prediction snap_scaffold_422-snap.1-T1 fails validation.
(ATG)	 AA	984-1124	GT	ATG
(ATA)	 AG	3813-3850	GT	AAG
(AGC)	 AG	3974-4045	GT	TTG
(GCG)	 AG	6040-6190	GT	AGG
-recovered snap_scaffold_422-snap.1-T1, initial, 984, 1124
-recovered snap_scaffold_422-snap.1-T1, internal, 3813, 3850
-recovered snap_scaffold_422-snap.1-T1, internal, 3974, 4045
-recovered snap_scaffold_422-snap.1-T1, internal, 6040, 6190
Couldn't classify 6451, 6536
Sorry, prediction GeneMark_model.107591_t fails validation.
(ATG)	 AA	984-1129	GC	CTG
(GGC)	 AG	2968-3015	GT	GGG
(TAA)	 AG	3235-3246	GT	AGG
(GCA)	 AG	3477-3657	GT	CAG
(ATA)	 AG	3813-3850	GT	AAG
(AGC)	 AG	3974-4045	GT	TTG
(AGA)	 AG	4289-4315	GC	AAG
(GAG)	 AG	4337-4342	GC	AAG
(GGA)	 AG	4388-4445	GT	TGG
(CCC)	 AG	4521-4555	GT	TGG
(GGA)	 AG	4858-4887	GT	AAG
(GAA)	 AG	4920-5047	GT	TGG
(CAC)	 AG	6006-6183	GC	GGG
(GGA)	 AG	6281-6427	GC	GAG
(GGA)	 AG	6451-6536	GT	GAG
-recovered GeneMark_model.107591_t, initial, 984, 1129
-recovered GeneMark_model.107591_t, internal, 2968, 3015
-recovered GeneMark_model.107591_t, internal, 3235, 3246
-recovered GeneMark_model.107591_t, internal, 3477, 3657
-recovered GeneMark_model.107591_t, internal, 3813, 3850
-recovered GeneMark_model.107591_t, internal, 3974, 4045
-recovered GeneMark_model.107591_t, internal, 4289, 4315
-recovered GeneMark_model.107591_t, internal, 4337, 4342
-recovered GeneMark_model.107591_t, internal, 4388, 4445
-recovered GeneMark_model.107591_t, internal, 4521, 4555
-recovered GeneMark_model.107591_t, internal, 4858, 4887
-recovered GeneMark_model.107591_t, internal, 4920, 5047
-recovered GeneMark_model.107591_t, internal, 6006, 6183
-recovered GeneMark_model.107591_t, internal, 6281, 6427
-recovered GeneMark_model.107591_t, internal, 6451, 6536

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6107, rend_intergenic: 939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7090
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6107, rend_intergenic: 939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support