-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_421

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1185, 1238
Couldn't classify 6893, 7001
Sorry, prediction pasa_asmbl_43663.p1 fails validation.
(GAG)	 GA	1185-1238	GT	AGG
(GGT)	 AG	2632-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GTG)	 AG	6463-6521	GT	CAG
(ACC)	 AG	6632-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered pasa_asmbl_43663.p1, internal, 2632, 2841
-recovered pasa_asmbl_43663.p1, internal, 5769, 5885
-recovered pasa_asmbl_43663.p1, internal, 6463, 6521
-recovered pasa_asmbl_43663.p1, internal, 6632, 6697
-recovered pasa_asmbl_43663.p1, internal, 6893, 7001
Valid prediction for GlimmerHMM_glimmerT_61826-T1
Valid prediction for GeneMark_model.107590_t
Couldn't classify 6893, 7001
Sorry, prediction snap_scaffold_421-snap.2-T1 fails validation.
(ATG)	 AC	2638-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GGC)	 AG	6648-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered snap_scaffold_421-snap.2-T1, initial, 2638, 2841
-recovered snap_scaffold_421-snap.2-T1, internal, 5769, 5885
-recovered snap_scaffold_421-snap.2-T1, internal, 6648, 6697
-recovered snap_scaffold_421-snap.2-T1, internal, 6893, 7001
Valid prediction for snap_scaffold_421-snap.1-T1
add_exon() Sorry, snap_scaffold_421-snap.1-T1 378-576-terminal-1 is invalid.
Couldn't classify 457, 474
Sorry, prediction GeneMark_model.107589_t fails validation.
(AGG)	 AG	457-474	GT	ACG
(GCT)	 AG	572-649	GC	AGG
(GCT)	 AG	672-773	GC	AGG
(GCT)	 AG	816-965	GC	AGG
(GCT)	 AG	990-1088	GC	GCG
(AGA)	 AG	1120-1227	GT	GAG
(AAA)	 AG	3415-3616	AG	AAA
-recovered GeneMark_model.107589_t, terminal, 3415, 3616
-recovered GeneMark_model.107589_t, internal, 457, 474
-recovered GeneMark_model.107589_t, internal, 572, 649
-recovered GeneMark_model.107589_t, internal, 672, 773
-recovered GeneMark_model.107589_t, internal, 816, 965
-recovered GeneMark_model.107589_t, internal, 990, 1088
-recovered GeneMark_model.107589_t, internal, 1120, 1227
Couldn't classify 6893, 7001
Sorry, prediction Augustus_model.g41094.t1 fails validation.
(ATG)	 TA	2605-2841	GT	AGG
(TTC)	 AG	5769-5885	GT	AGG
(GTG)	 AG	6463-6521	GT	CAG
(ACC)	 AG	6632-6697	GT	GAG
(CGA)	 AG	6893-7001	GT	CGG
-recovered Augustus_model.g41094.t1, initial, 2605, 2841
-recovered Augustus_model.g41094.t1, internal, 5769, 5885
-recovered Augustus_model.g41094.t1, internal, 6463, 6521
-recovered Augustus_model.g41094.t1, internal, 6632, 6697
-recovered Augustus_model.g41094.t1, internal, 6893, 7001

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 120, 212
Sorry, prediction snap_scaffold_421-snap.3-T1 fails validation.
(GTC)	 AG	120-212	GT	ATG
(GCA)	 AG	3850-4014	GT	AGG
(GTT)	 AG	4271-4318	TT	AGT
-recovered snap_scaffold_421-snap.3-T1, terminal, 4271, 4318
-recovered snap_scaffold_421-snap.3-T1, internal, 120, 212
-recovered snap_scaffold_421-snap.3-T1, internal, 3850, 4014

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 2773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7090
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 7001, rend_intergenic: 2773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support