-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_420

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_420-snap.1-T1
Valid prediction for snap_scaffold_420-snap.2-T1
Valid prediction for GeneMark_model.107587_t
Valid prediction for GlimmerHMM_glimmerT_61825-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 14, 199
Sorry, prediction GeneMark_model.107588_t fails validation.
(ACT)	 AG	14-199	GT	CTG
(GGT)	 AG	220-252	GT	CTG
(GGT)	 AG	273-305	GT	CTG
(GGT)	 AG	326-358	GT	TTG
(GGT)	 AG	379-411	GT	CTG
(GGT)	 AG	432-468	GT	GAG
-recovered GeneMark_model.107588_t, terminal, 432, 468
-recovered GeneMark_model.107588_t, internal, 14, 199
-recovered GeneMark_model.107588_t, internal, 220, 252
-recovered GeneMark_model.107588_t, internal, 273, 305
-recovered GeneMark_model.107588_t, internal, 326, 358
-recovered GeneMark_model.107588_t, internal, 379, 411
-recovered GeneMark_model.107588_t, internal, 432, 468
Couldn't classify 5474, 5578
Sorry, prediction GeneMark_model.107586_t fails validation.
(ATG)	 CT	3554-3579	GT	CCG
(GTA)	 AG	4026-4136	GT	GGG
(GGA)	 AG	5474-5578	GT	ATG
-recovered GeneMark_model.107586_t, initial, 3554, 3579
-recovered GeneMark_model.107586_t, internal, 4026, 4136
-recovered GeneMark_model.107586_t, internal, 5474, 5578

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7096
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support