-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_417

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 506, 615
Sorry, prediction GlimmerHMM_glimmerT_61823-T1 fails validation.
(AGG)	 AG	506-615	GT	ATG
(GCT)	 AG	906-1196	TC	AGT
-recovered GlimmerHMM_glimmerT_61823-T1, terminal, 906, 1196
-recovered GlimmerHMM_glimmerT_61823-T1, internal, 506, 615
Valid prediction for GlimmerHMM_glimmerT_61822-T1
Valid prediction for CodingQuarry_transcript_49331-T1
Valid prediction for snap_scaffold_417-snap.3-T1
Valid prediction for snap_scaffold_417-snap.2-T1
Couldn't classify 6888, 7051
Sorry, prediction GeneMark_model.107577_t fails validation.
(ATG)	 CA	5839-6010	GT	CGG
(GAT)	 AG	6187-6314	GT	AGG
(ATG)	 AG	6857-6867	GT	ATG
(AAT)	 AG	6888-7051	GT	AGG
-recovered GeneMark_model.107577_t, initial, 5839, 6010
-recovered GeneMark_model.107577_t, initial, 6857, 6867
-recovered GeneMark_model.107577_t, internal, 6187, 6314
-recovered GeneMark_model.107577_t, internal, 6857, 6867
-recovered GeneMark_model.107577_t, internal, 6888, 7051
Couldn't classify 6857, 7051
Sorry, prediction Augustus_model.g41091.t1 fails validation.
(ATG)	 CA	5839-6010	GT	CGG
(GAT)	 AG	6187-6314	GT	AGG
(GGA)	 AG	6401-6510	GT	CAG
(ACT)	 AG	6686-6720	GT	AGG
(ATG)	 AG	6857-7051	GT	AGG
-recovered Augustus_model.g41091.t1, initial, 5839, 6010
add_exon() Sorry, Augustus_model.g41091.t1 6857-7051-initial-1 is invalid.
-recovered Augustus_model.g41091.t1, initial, 6857, 7051
-recovered Augustus_model.g41091.t1, internal, 6187, 6314
-recovered Augustus_model.g41091.t1, internal, 6401, 6510
-recovered Augustus_model.g41091.t1, internal, 6686, 6720
-recovered Augustus_model.g41091.t1, internal, 6857, 7051
Valid prediction for Augustus_model.g41092.t1
Valid prediction for GlimmerHMM_glimmerT_61821-T1
Couldn't classify 6857, 7051
Sorry, prediction snap_scaffold_417-snap.1-T1 fails validation.
(ATG)	 CA	5839-6010	GT	CGG
(GAT)	 AG	6187-6314	GT	AGG
(GGA)	 AG	6401-6521	GT	CAG
(ATG)	 AG	6857-7051	GT	AGG
-recovered snap_scaffold_417-snap.1-T1, initial, 5839, 6010
add_exon() Sorry, snap_scaffold_417-snap.1-T1 6857-7051-initial-1 is invalid.
-recovered snap_scaffold_417-snap.1-T1, initial, 6857, 7051
-recovered snap_scaffold_417-snap.1-T1, internal, 6187, 6314
-recovered snap_scaffold_417-snap.1-T1, internal, 6401, 6521
-recovered snap_scaffold_417-snap.1-T1, internal, 6857, 7051
Couldn't classify 506, 615
Sorry, prediction GeneMark_model.107578_t fails validation.
(AGG)	 AG	506-615	GT	ATG
(GCT)	 AG	906-1196	TC	AGT
-recovered GeneMark_model.107578_t, terminal, 906, 1196
-recovered GeneMark_model.107578_t, internal, 506, 615

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7145
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support