-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_416

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41090.t1
Couldn't classify 7108, 7116
Sorry, prediction GeneMark_model.107576_t fails validation.
(ATG)	 AG	6319-6444	GT	AGG
(CAG)	 AG	6831-7012	GT	GTG
(CCA)	 AG	7108-7116	GT	AGG
-recovered GeneMark_model.107576_t, initial, 6319, 6444
-recovered GeneMark_model.107576_t, internal, 6319, 6444
-recovered GeneMark_model.107576_t, internal, 6831, 7012
-recovered GeneMark_model.107576_t, internal, 7108, 7116
Couldn't classify 6831, 6986
Sorry, prediction GlimmerHMM_glimmerT_61820-T1 fails validation.
(ATG)	 AG	6319-6444	GT	AGG
(CAG)	 AG	6831-6986	GT	AGG
-recovered GlimmerHMM_glimmerT_61820-T1, initial, 6319, 6444
-recovered GlimmerHMM_glimmerT_61820-T1, internal, 6319, 6444
-recovered GlimmerHMM_glimmerT_61820-T1, internal, 6831, 6986
Couldn't classify 6831, 6986
Sorry, prediction snap_scaffold_416-snap.2-T1 fails validation.
(ATG)	 TC	3496-3529	GT	AAG
(GGC)	 AG	5853-5956	GT	TCG
(CCT)	 AG	6277-6444	GT	AGG
(CAG)	 AG	6831-6986	GT	AGG
-recovered snap_scaffold_416-snap.2-T1, initial, 3496, 3529
-recovered snap_scaffold_416-snap.2-T1, internal, 5853, 5956
-recovered snap_scaffold_416-snap.2-T1, internal, 6277, 6444
-recovered snap_scaffold_416-snap.2-T1, internal, 6831, 6986

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6776, 7003
Sorry, prediction snap_scaffold_416-snap.1-T1 fails validation.
(ATG)	 AA	1631-1674	GT	AAG
(CAC)	 AG	3735-3810	GT	ATG
(AAC)	 AG	6776-7003	GT	GGG
-recovered snap_scaffold_416-snap.1-T1, initial, 1631, 1674
-recovered snap_scaffold_416-snap.1-T1, internal, 3735, 3810
-recovered snap_scaffold_416-snap.1-T1, internal, 6776, 7003
Valid prediction for GeneMark_model.107575_t
Couldn't classify 7041, 7109
Sorry, prediction GeneMark_model.107574_t fails validation.
(ATG)	 AG	6756-6841	GT	GAG
(AGA)	 AG	6880-6912	GC	AAG
(AAG)	 AG	6937-6972	GC	AAG
(AGA)	 AG	6995-7003	GT	GGG
(ACA)	 AG	7041-7109	GT	GGG
-recovered GeneMark_model.107574_t, initial, 6756, 6841
-recovered GeneMark_model.107574_t, internal, 6756, 6841
-recovered GeneMark_model.107574_t, internal, 6880, 6912
-recovered GeneMark_model.107574_t, internal, 6937, 6972
-recovered GeneMark_model.107574_t, internal, 6995, 7003
-recovered GeneMark_model.107574_t, internal, 7041, 7109

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5519, rend_intergenic: 3496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7149
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5519, rend_intergenic: 3496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support