-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_415

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 667, 756
Sorry, prediction GeneMark_model.107571_t fails validation.
(GTT)	 AG	667-756	GT	TCG
(GGG)	 AG	887-967	GT	AGG
(GAG)	 AG	1006-1035	GT	GAG
(GGA)	 AG	1063-1071	GT	GGG
(AAA)	 AG	2634-2649	GT	TTG
(ACT)	 AG	2713-2732	GT	GAG
(GGC)	 AG	2843-2864	AA	GAA
-recovered GeneMark_model.107571_t, terminal, 2843, 2864
-recovered GeneMark_model.107571_t, internal, 667, 756
-recovered GeneMark_model.107571_t, internal, 887, 967
-recovered GeneMark_model.107571_t, internal, 1006, 1035
-recovered GeneMark_model.107571_t, internal, 1063, 1071
-recovered GeneMark_model.107571_t, internal, 2634, 2649
-recovered GeneMark_model.107571_t, internal, 2713, 2732
Valid prediction for snap_scaffold_415-snap.1-T1
add_exon() Sorry, snap_scaffold_415-snap.1-T1 2977-3338-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 100
Sorry, prediction GeneMark_model.107573_t fails validation.
(AGG)	 AG	32-100	GC	GAG
(AGA)	 AG	138-344	GC	CAG
(AGA)	 AG	366-500	GC	CAG
(AGA)	 AG	526-618	GT	GAG
(GGG)	 AG	962-1198	GT	GGG
(AGA)	 AG	1221-1232	GC	GGG
(GGA)	 AG	1267-1287	GT	GGG
(AGG)	 AG	1310-1372	GT	GGG
(GGG)	 AG	1407-1446	AG	AGA
-recovered GeneMark_model.107573_t, terminal, 1407, 1446
-recovered GeneMark_model.107573_t, internal, 32, 100
-recovered GeneMark_model.107573_t, internal, 138, 344
-recovered GeneMark_model.107573_t, internal, 366, 500
-recovered GeneMark_model.107573_t, internal, 526, 618
-recovered GeneMark_model.107573_t, internal, 962, 1198
-recovered GeneMark_model.107573_t, internal, 1221, 1232
-recovered GeneMark_model.107573_t, internal, 1267, 1287
-recovered GeneMark_model.107573_t, internal, 1310, 1372
Valid prediction for GeneMark_model.107572_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7155
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support