-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_414

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107568_t
Valid prediction for GeneMark_model.107570_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1672, 2446
Sorry, prediction snap_scaffold_414-snap.1-T1 fails validation.
(GAT)	 AG	1672-2446	GT	AGG
-recovered snap_scaffold_414-snap.1-T1, internal, 1672, 2446
Valid prediction for Augustus_model.g41089.t1
Valid prediction for GeneMark_model.107569_t
Couldn't classify 6905, 7000
Sorry, prediction GeneMark_model.107567_t fails validation.
(ATG)	 TG	3689-3705	GT	CTG
(AGA)	 AG	3825-3902	GT	GTG
(GCG)	 AG	3926-3960	GT	GGG
(AGA)	 AG	4323-4395	GT	CCG
(AGC)	 AG	4628-4657	GT	GAG
(AGT)	 AG	6556-6594	GT	GGG
(GAA)	 AG	6618-6647	GT	GAG
(GGC)	 AG	6677-6781	GT	GAG
(AGA)	 AG	6809-6829	GT	GAG
(AGA)	 AG	6851-6871	GT	GAG
(AGA)	 AG	6905-7000	GT	CAG
-recovered GeneMark_model.107567_t, initial, 3689, 3705
-recovered GeneMark_model.107567_t, internal, 3825, 3902
-recovered GeneMark_model.107567_t, internal, 3926, 3960
-recovered GeneMark_model.107567_t, internal, 4323, 4395
-recovered GeneMark_model.107567_t, internal, 4628, 4657
-recovered GeneMark_model.107567_t, internal, 6556, 6594
-recovered GeneMark_model.107567_t, internal, 6618, 6647
-recovered GeneMark_model.107567_t, internal, 6677, 6781
-recovered GeneMark_model.107567_t, internal, 6809, 6829
-recovered GeneMark_model.107567_t, internal, 6851, 6871
-recovered GeneMark_model.107567_t, internal, 6905, 7000
Valid prediction for GlimmerHMM_glimmerT_61819-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7180
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support