-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_413

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51, 104
Sorry, prediction GeneMark_model.107566_t fails validation.
(GAA)	 AG	51-104	GT	AAG
(CGA)	 AG	251-403	GT	AGG
(GGA)	 AG	425-445	GT	GGG
(AGG)	 AG	469-513	GT	GAG
(AGA)	 AG	550-567	GT	GGG
(GGA)	 AG	608-638	GT	AGG
(AAT)	 AG	841-1212	GT	AGG
(CAC)	 AG	1233-1346	GT	CAG
(GAC)	 AG	1975-2381	GT	TGG
(GGT)	 AG	2787-2795	GT	GTG
(AAG)	 AG	3024-3077	GT	ACG
(ACA)	 AG	3234-3269	GT	ACG
(ACA)	 AG	3292-3432	GT	GGG
(AGC)	 AG	3603-3626	GT	AGG
(TGC)	 AG	4160-4216	GT	AGG
(ACA)	 AG	4265-4594	GT	AGG
(ACA)	 AG	4627-4687	CA	AAC
-recovered GeneMark_model.107566_t, terminal, 469, 513
-recovered GeneMark_model.107566_t, terminal, 3603, 3626
-recovered GeneMark_model.107566_t, terminal, 4627, 4687
-recovered GeneMark_model.107566_t, internal, 51, 104
-recovered GeneMark_model.107566_t, internal, 251, 403
-recovered GeneMark_model.107566_t, internal, 425, 445
-recovered GeneMark_model.107566_t, internal, 469, 513
-recovered GeneMark_model.107566_t, internal, 550, 567
-recovered GeneMark_model.107566_t, internal, 608, 638
-recovered GeneMark_model.107566_t, internal, 841, 1212
-recovered GeneMark_model.107566_t, internal, 1233, 1346
-recovered GeneMark_model.107566_t, internal, 1975, 2381
-recovered GeneMark_model.107566_t, internal, 2787, 2795
-recovered GeneMark_model.107566_t, internal, 3024, 3077
-recovered GeneMark_model.107566_t, internal, 3234, 3269
-recovered GeneMark_model.107566_t, internal, 3292, 3432
-recovered GeneMark_model.107566_t, internal, 3603, 3626
-recovered GeneMark_model.107566_t, internal, 4160, 4216
-recovered GeneMark_model.107566_t, internal, 4265, 4594
Valid prediction for snap_scaffold_413-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6808, 6965
Sorry, prediction Augustus_model.g41088.t1 fails validation.
(ATG)	 AA	482-526	GT	AGG
(ACC)	 AG	2202-2295	GT	AGG
(TAA)	 AG	2929-3074	GT	AGG
(CTG)	 AG	4773-4868	GT	AGG
(CTG)	 AG	5868-5963	GT	AGG
(ACT)	 AG	6353-6419	GT	AGG
(GCC)	 AG	6808-6965	GT	AGG
-recovered Augustus_model.g41088.t1, initial, 482, 526
-recovered Augustus_model.g41088.t1, internal, 2202, 2295
-recovered Augustus_model.g41088.t1, internal, 2929, 3074
-recovered Augustus_model.g41088.t1, internal, 4773, 4868
-recovered Augustus_model.g41088.t1, internal, 5868, 5963
-recovered Augustus_model.g41088.t1, internal, 6353, 6419
-recovered Augustus_model.g41088.t1, internal, 6808, 6965
Couldn't classify 2155, 2295
Sorry, prediction GlimmerHMM_glimmerT_61818-T1 fails validation.
(ACT)	 AG	2155-2295	GT	AGG
(TAA)	 AG	2929-3094	GT	GTG
(CTA)	 AG	4822-5229	GT	TGG
(CTA)	 AG	5917-6419	GT	AGG
(GCC)	 AG	6808-7013	GG	AGG
-recovered GlimmerHMM_glimmerT_61818-T1, terminal, 6808, 7013
-recovered GlimmerHMM_glimmerT_61818-T1, internal, 2155, 2295
-recovered GlimmerHMM_glimmerT_61818-T1, internal, 2929, 3094
-recovered GlimmerHMM_glimmerT_61818-T1, internal, 4822, 5229
-recovered GlimmerHMM_glimmerT_61818-T1, internal, 5917, 6419
Couldn't classify 2155, 2295
Couldn't classify 6808, 6965
Sorry, prediction snap_scaffold_413-snap.2-T1 fails validation.
(ACT)	 AG	2155-2295	GT	AGG
(TAA)	 AG	2929-3092	GT	ATG
(CTG)	 AG	4773-4868	GT	AGG
(GGC)	 AG	4892-5209	GT	ATG
(CTG)	 AG	5868-5963	GT	AGG
(GGC)	 AG	5987-6419	GT	AGG
(GCC)	 AG	6808-6965	GT	AGG
-recovered snap_scaffold_413-snap.2-T1, internal, 2155, 2295
-recovered snap_scaffold_413-snap.2-T1, internal, 2929, 3092
-recovered snap_scaffold_413-snap.2-T1, internal, 4773, 4868
-recovered snap_scaffold_413-snap.2-T1, internal, 4892, 5209
-recovered snap_scaffold_413-snap.2-T1, internal, 5868, 5963
-recovered snap_scaffold_413-snap.2-T1, internal, 5987, 6419
-recovered snap_scaffold_413-snap.2-T1, internal, 6808, 6965

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6696, rend_intergenic: 222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7186
-exon list size: 69


building trellis

1.4    
2.8    
4.2    
5.6    
7.0    
8.5    
9.9    
11.3    
12.7    
14.1    
15.5    
16.9    
18.3    
19.7    
21.1    
22.5    
23.9    
25.4    
26.8    
28.2    
29.6    
31.0    
32.4    
33.8    
35.2    
36.6    
38.0    
39.4    
40.8    
42.3    
43.7    
45.1    
46.5    
47.9    
49.3    
50.7    
52.1    
53.5    
54.9    
56.3    
57.7    
59.2    
60.6    
62.0    
63.4    
64.8    
66.2    
67.6    
69.0    
70.4    
71.8    
73.2    
74.6    
76.1    
77.5    
78.9    
80.3    
81.7    
83.1    
84.5    
85.9    
87.3    
88.7    
90.1    
91.5    
93.0    
94.4    
95.8    
97.2    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6696, rend_intergenic: 222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support