-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_411

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5971, 6117
Sorry, prediction GeneMark_model.107563_t fails validation.
(ATG)	 GC	4296-4483	GT	AGG
(GAC)	 AG	5310-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6117	GT	AGG
-recovered GeneMark_model.107563_t, initial, 4296, 4483
-recovered GeneMark_model.107563_t, internal, 5310, 5384
-recovered GeneMark_model.107563_t, internal, 5624, 5711
-recovered GeneMark_model.107563_t, internal, 5971, 6117
Couldn't classify 5971, 6117
Sorry, prediction GlimmerHMM_glimmerT_61815-T1 fails validation.
(ATG)	 TC	4904-4926	GT	CAG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6117	GT	AGG
-recovered GlimmerHMM_glimmerT_61815-T1, initial, 4904, 4926
-recovered GlimmerHMM_glimmerT_61815-T1, internal, 5283, 5384
-recovered GlimmerHMM_glimmerT_61815-T1, internal, 5624, 5711
-recovered GlimmerHMM_glimmerT_61815-T1, internal, 5971, 6117
Valid prediction for GlimmerHMM_glimmerT_61814-T1
Couldn't classify 5971, 6117
Sorry, prediction snap_scaffold_411-snap.2-T1 fails validation.
(ATG)	 GG	3443-3472	GT	AAG
(GTG)	 AG	4263-4483	GT	AGG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6117	GT	AGG
-recovered snap_scaffold_411-snap.2-T1, initial, 3443, 3472
-recovered snap_scaffold_411-snap.2-T1, internal, 4263, 4483
-recovered snap_scaffold_411-snap.2-T1, internal, 5283, 5384
-recovered snap_scaffold_411-snap.2-T1, internal, 5624, 5711
-recovered snap_scaffold_411-snap.2-T1, internal, 5971, 6117
Valid prediction for Augustus_model.g41086.t1
Couldn't classify 964, 1020
Sorry, prediction GeneMark_model.107562_t fails validation.
(GAG)	 AG	964-1020	GT	GGG
(GGA)	 AG	1043-1082	GT	AGG
(AGA)	 AG	1108-1281	CG	AGC
-recovered GeneMark_model.107562_t, terminal, 1108, 1281
-recovered GeneMark_model.107562_t, internal, 964, 1020
-recovered GeneMark_model.107562_t, internal, 1043, 1082
Couldn't classify 4248, 4483
Couldn't classify 5971, 6081
Sorry, prediction pasa_asmbl_43657.p1 fails validation.
(CCC)	 CA	4248-4483	GT	AGG
(GTC)	 AG	5283-5384	GT	AGG
(AGA)	 AG	5624-5711	GT	TGG
(GCG)	 AG	5971-6081	TT	AGT
-recovered pasa_asmbl_43657.p1, internal, 5283, 5384
-recovered pasa_asmbl_43657.p1, internal, 5624, 5711

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1110, 1202
Sorry, prediction snap_scaffold_411-snap.1-T1 fails validation.
(GAA)	 AG	1110-1202	GT	AGG
(CAC)	 AG	1818-1906	GT	TCG
(GTT)	 AG	2818-2933	GT	CTG
(GGT)	 AG	6259-6266	AG	GAA
-recovered snap_scaffold_411-snap.1-T1, terminal, 6259, 6266
-recovered snap_scaffold_411-snap.1-T1, internal, 1110, 1202
-recovered snap_scaffold_411-snap.1-T1, internal, 1818, 1906
-recovered snap_scaffold_411-snap.1-T1, internal, 2818, 2933

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6084, rend_intergenic: 3443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7193
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6084, rend_intergenic: 3443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support