-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_410

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107561_t
Valid prediction for snap_scaffold_410-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61811-T1
Valid prediction for GlimmerHMM_glimmerT_61813-T1
Couldn't classify 3785, 4147
Sorry, prediction pasa_asmbl_43653.p1 fails validation.
(GAC)	 CA	3785-4147	TC	AAT
Valid prediction for Augustus_model.g41085.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41083.t1
Valid prediction for Augustus_model.g41084.t1
Couldn't classify 7106, 7181
Sorry, prediction GeneMark_model.107560_t fails validation.
(ATG)	 CT	5663-5688	GT	TGG
(GCC)	 AG	5829-6601	GT	GGG
(GCC)	 AG	6638-7031	GT	AAG
(GTA)	 AG	7106-7181	GC	AGG
-recovered GeneMark_model.107560_t, initial, 5663, 5688
-recovered GeneMark_model.107560_t, internal, 5829, 6601
-recovered GeneMark_model.107560_t, internal, 6638, 7031
-recovered GeneMark_model.107560_t, internal, 7106, 7181
Valid prediction for GlimmerHMM_glimmerT_61812-T1
Valid prediction for snap_scaffold_410-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7201
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support