-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_409

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41082.t1
Couldn't classify 3172, 3301
Couldn't classify 3945, 4039
Sorry, prediction snap_scaffold_409-snap.2-T1 fails validation.
(AAC)	 AG	3172-3301	GT	ATG
(CCG)	 AG	3945-4039	GT	TGG
-recovered snap_scaffold_409-snap.2-T1, internal, 3172, 3301
-recovered snap_scaffold_409-snap.2-T1, internal, 3945, 4039
Valid prediction for GlimmerHMM_glimmerT_61810-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107558_t
Valid prediction for snap_scaffold_409-snap.1-T1
Couldn't classify 1565, 1651
Sorry, prediction snap_scaffold_409-snap.3-T1 fails validation.
(GTA)	 AG	1565-1651	GT	ATG
(AGC)	 AG	1936-2024	GT	GTG
(ATA)	 AG	2974-3053	TT	GAT
-recovered snap_scaffold_409-snap.3-T1, terminal, 2974, 3053
-recovered snap_scaffold_409-snap.3-T1, internal, 1565, 1651
-recovered snap_scaffold_409-snap.3-T1, internal, 1936, 2024
Valid prediction for GeneMark_model.107557_t
Couldn't classify 567, 665
Sorry, prediction GeneMark_model.107559_t fails validation.
(ACA)	 AG	567-665	GT	GAG
(AGA)	 AG	732-758	GT	GAG
(AGA)	 AG	785-808	GT	TGG
(GGA)	 AG	829-852	GT	AAG
(TGA)	 AG	901-951	GT	AAG
(TGA)	 AG	983-1000	GT	AAG
(TGA)	 AG	1023-1039	GT	AGG
(GGA)	 AG	1062-1153	AG	GAA
-recovered GeneMark_model.107559_t, terminal, 1062, 1153
-recovered GeneMark_model.107559_t, internal, 567, 665
-recovered GeneMark_model.107559_t, internal, 732, 758
-recovered GeneMark_model.107559_t, internal, 785, 808
-recovered GeneMark_model.107559_t, internal, 829, 852
-recovered GeneMark_model.107559_t, internal, 901, 951
-recovered GeneMark_model.107559_t, internal, 983, 1000
-recovered GeneMark_model.107559_t, internal, 1023, 1039

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4089, rend_intergenic: 3172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7201
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4089, rend_intergenic: 3172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support