-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_404 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 6904, 7095 Sorry, prediction GlimmerHMM_glimmerT_61805-T1 fails validation. (ATG) TG 5400-5566 GT AGG (GGA) AG 5635-5779 GT AGG (GCT) AG 6904-7095 GT GGG -recovered GlimmerHMM_glimmerT_61805-T1, initial, 5400, 5566 -recovered GlimmerHMM_glimmerT_61805-T1, internal, 5635, 5779 -recovered GlimmerHMM_glimmerT_61805-T1, internal, 6904, 7095 Couldn't classify 6904, 7095 Sorry, prediction GeneMark_model.107544_t fails validation. (ATG) AG 4253-4561 GT CTG (GCA) AG 4594-5201 GT GGG (TAG) AG 5227-5329 GT CAG (TCA) AG 5421-5544 GT CTG (GTA) AG 5567-5588 GT GCG (GGA) AG 5635-5779 GT AGG (GCT) AG 6904-7095 GT GGG -recovered GeneMark_model.107544_t, initial, 4253, 4561 -recovered GeneMark_model.107544_t, internal, 4253, 4561 -recovered GeneMark_model.107544_t, internal, 4594, 5201 -recovered GeneMark_model.107544_t, internal, 5227, 5329 -recovered GeneMark_model.107544_t, internal, 5421, 5544 -recovered GeneMark_model.107544_t, internal, 5567, 5588 -recovered GeneMark_model.107544_t, internal, 5635, 5779 -recovered GeneMark_model.107544_t, internal, 6904, 7095 Valid prediction for GeneMark_model.107542_t Couldn't classify 6904, 7095 Sorry, prediction snap_scaffold_404-snap.2-T1 fails validation. (ATG) TG 1356-1469 GT TTG (CAC) AG 2108-2233 GT AGG (GTG) AG 2479-2562 GT AGG (GCC) AG 3536-3619 GT AGG (GCC) AG 3708-3832 GT CGG (GAT) AG 4228-4393 GT CTG (TAC) AG 4567-5193 GT CAG (TCA) AG 5421-5566 GT AGG (GGA) AG 5635-5779 GT AGG (GCT) AG 6904-7095 GT GGG -recovered snap_scaffold_404-snap.2-T1, initial, 1356, 1469 -recovered snap_scaffold_404-snap.2-T1, internal, 2108, 2233 -recovered snap_scaffold_404-snap.2-T1, internal, 2479, 2562 -recovered snap_scaffold_404-snap.2-T1, internal, 3536, 3619 -recovered snap_scaffold_404-snap.2-T1, internal, 3708, 3832 -recovered snap_scaffold_404-snap.2-T1, internal, 4228, 4393 -recovered snap_scaffold_404-snap.2-T1, internal, 4567, 5193 -recovered snap_scaffold_404-snap.2-T1, internal, 5421, 5566 -recovered snap_scaffold_404-snap.2-T1, internal, 5635, 5779 -recovered snap_scaffold_404-snap.2-T1, internal, 6904, 7095 Couldn't classify 6904, 7095 Sorry, prediction pasa_asmbl_43651.p1 fails validation. (ATG) TC 2123-2233 GT AGG (GTG) AG 2479-2562 GT AGG (GCC) AG 3536-3619 GT AGG (GCC) AG 3708-3832 GT CGG (GAT) AG 4228-4393 GT CTG (TCA) AG 5421-5566 GT AGG (GGA) AG 5635-5779 GT AGG (GCT) AG 6904-7095 GT GGG -recovered pasa_asmbl_43651.p1, initial, 2123, 2233 -recovered pasa_asmbl_43651.p1, internal, 2479, 2562 -recovered pasa_asmbl_43651.p1, internal, 3536, 3619 -recovered pasa_asmbl_43651.p1, internal, 3708, 3832 -recovered pasa_asmbl_43651.p1, internal, 4228, 4393 -recovered pasa_asmbl_43651.p1, internal, 5421, 5566 -recovered pasa_asmbl_43651.p1, internal, 5635, 5779 -recovered pasa_asmbl_43651.p1, internal, 6904, 7095 Couldn't classify 793, 898 Sorry, prediction Augustus_model.g41077.t1 fails validation. (ATA) AG 793-898 GT GGG (ACA) AG 1372-1469 GT TTG (CAC) AG 2108-2233 GT AGG (GTG) AG 2479-2562 GT AGG (GCC) AG 3536-3619 GT AGG (GCC) AG 3708-3832 GT CGG (GAT) AG 4228-4393 GT CTG (TCA) AG 5421-5566 GT AGG (GGA) AG 5635-5779 GT AGG (GCT) AG 6904-7104 GC GAG -recovered Augustus_model.g41077.t1, terminal, 6904, 7104 -recovered Augustus_model.g41077.t1, internal, 793, 898 -recovered Augustus_model.g41077.t1, internal, 1372, 1469 -recovered Augustus_model.g41077.t1, internal, 2108, 2233 -recovered Augustus_model.g41077.t1, internal, 2479, 2562 -recovered Augustus_model.g41077.t1, internal, 3536, 3619 -recovered Augustus_model.g41077.t1, internal, 3708, 3832 -recovered Augustus_model.g41077.t1, internal, 4228, 4393 -recovered Augustus_model.g41077.t1, internal, 5421, 5566 -recovered Augustus_model.g41077.t1, internal, 5635, 5779 -recovered Augustus_model.g41077.t1, internal, 6904, 7104 Valid prediction for snap_scaffold_404-snap.1-T1 Valid prediction for GlimmerHMM_glimmerT_61804-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107543_t Couldn't classify 5002, 5053 Sorry, prediction snap_scaffold_404-snap.3-T1 fails validation. (ATG) TT 83-226 GT GGG (GTG) AG 1549-1748 GT GGG (GGG) AG 3041-3338 GT ACG (GCG) AG 5002-5053 GT AGG -recovered snap_scaffold_404-snap.3-T1, initial, 83, 226 -recovered snap_scaffold_404-snap.3-T1, internal, 1549, 1748 -recovered snap_scaffold_404-snap.3-T1, internal, 3041, 3338 -recovered snap_scaffold_404-snap.3-T1, internal, 5002, 5053 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7095, rend_intergenic: 2194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 7246 -exon list size: 57 building trellis 1.7 3.4 5.1 6.8 8.5 10.2 11.9 13.6 15.3 16.9 18.6 20.3 22.0 23.7 25.4 27.1 28.8 30.5 32.2 33.9 35.6 37.3 39.0 40.7 42.4 44.1 45.8 47.5 49.2 50.8 52.5 54.2 55.9 57.6 59.3 61.0 62.7 64.4 66.1 67.8 69.5 71.2 72.9 74.6 76.3 78.0 79.7 81.4 83.1 84.7 86.4 88.1 89.8 91.5 93.2 94.9 96.6 98.3 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 7095, rend_intergenic: 2194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support