-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_403

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5102, 5383
Sorry, prediction snap_scaffold_403-snap.1-T1 fails validation.
(ATG)	 GA	394-424	GT	TGG
(TCC)	 AG	5102-5383	GT	TGG
-recovered snap_scaffold_403-snap.1-T1, initial, 394, 424
-recovered snap_scaffold_403-snap.1-T1, internal, 5102, 5383

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1664, 1690
Sorry, prediction GeneMark_model.107541_t fails validation.
(AGG)	 AG	1664-1690	GT	AAG
(AGG)	 AG	1928-1938	GT	ATG
(ACG)	 AG	1966-2131	GT	GGG
(AGC)	 AG	2204-2549	GG	GAG
-recovered GeneMark_model.107541_t, terminal, 2204, 2549
-recovered GeneMark_model.107541_t, internal, 1664, 1690
-recovered GeneMark_model.107541_t, internal, 1928, 1938
-recovered GeneMark_model.107541_t, internal, 1966, 2131
Valid prediction for GlimmerHMM_glimmerT_61803-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61803-T1 1966-2287-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7275
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support