-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_400

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61797-T1
Valid prediction for GeneMark_model.107530_t
Valid prediction for GlimmerHMM_glimmerT_61796-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6976, 7035
Sorry, prediction snap_scaffold_400-snap.1-T1 fails validation.
(ATG)	 GA	2313-2378	GT	AGG
(ACC)	 AG	5737-5773	GT	GGG
(TCC)	 AG	6536-6641	GT	ATG
(ACC)	 AG	6976-7035	GT	AGG
-recovered snap_scaffold_400-snap.1-T1, initial, 2313, 2378
-recovered snap_scaffold_400-snap.1-T1, internal, 5737, 5773
-recovered snap_scaffold_400-snap.1-T1, internal, 6536, 6641
-recovered snap_scaffold_400-snap.1-T1, internal, 6976, 7035
Couldn't classify 428, 645
Sorry, prediction GeneMark_model.107531_t fails validation.
(AGA)	 AG	428-645	GT	GGG
(CCA)	 AG	1234-1292	GA	AAG
-recovered GeneMark_model.107531_t, terminal, 1234, 1292
-recovered GeneMark_model.107531_t, internal, 428, 645
Couldn't classify 362, 668
Sorry, prediction snap_scaffold_400-snap.2-T1 fails validation.
(AAG)	 AG	362-668	GT	TGG
(CGG)	 AG	2025-2099	TT	GAT
-recovered snap_scaffold_400-snap.2-T1, terminal, 2025, 2099
-recovered snap_scaffold_400-snap.2-T1, internal, 362, 668
Valid prediction for GlimmerHMM_glimmerT_61798-T1
Couldn't classify 7233, 7265
Sorry, prediction GeneMark_model.107529_t fails validation.
(ATG)	 CA	6953-7035	GT	AGG
(AGC)	 AG	7064-7108	GT	AGG
(GGA)	 AG	7157-7201	GT	GAG
(GGA)	 AG	7233-7265	GT	GAG
-recovered GeneMark_model.107529_t, initial, 6953, 7035
-recovered GeneMark_model.107529_t, internal, 7064, 7108
-recovered GeneMark_model.107529_t, internal, 7157, 7201
-recovered GeneMark_model.107529_t, internal, 7233, 7265

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7298
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 3 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support