-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_9557696-9713509 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.16502_t Valid prediction for GlimmerHMM_glimmerT_10152-T1 Valid prediction for GlimmerHMM_glimmerT_10157-T1 Valid prediction for GlimmerHMM_glimmerT_10173-T1 Valid prediction for GeneMark_model.16539_t Valid prediction for GeneMark_model.16504_t Valid prediction for GlimmerHMM_glimmerT_10175-T1 Valid prediction for GeneMark_model.16531_t Valid prediction for Augustus_model.g6671.t1 Valid prediction for GeneMark_model.16499_t Valid prediction for GlimmerHMM_glimmerT_10156-T1 Valid prediction for GlimmerHMM_glimmerT_10142-T1 Valid prediction for GeneMark_model.16529_t Valid prediction for snap_scaffold_4-snap.2051-T1 Valid prediction for snap_scaffold_4-snap.2023-T1 Valid prediction for Augustus_model.g6660.t1 Valid prediction for GlimmerHMM_glimmerT_10171-T1 Couldn't classify 98201, 98632 Sorry, prediction pasa_asmbl_42952.p1 fails validation. (CAT) CT 98201-98632 CC AGC Valid prediction for Augustus_model.g6665.t1 Valid prediction for GlimmerHMM_glimmerT_10160-T1 Valid prediction for snap_scaffold_4-snap.2028-T1 Valid prediction for snap_scaffold_4-snap.2037-T1 Valid prediction for snap_scaffold_4-snap.2050-T1 Valid prediction for GlimmerHMM_glimmerT_10158-T1 Valid prediction for GeneMark_model.16513_t Valid prediction for snap_scaffold_4-snap.2056-T1 Valid prediction for snap_scaffold_4-snap.2044-T1 Valid prediction for Augustus_model.g6662.t1 Valid prediction for GlimmerHMM_glimmerT_10143-T1 Valid prediction for GeneMark_model.16518_t Valid prediction for snap_scaffold_4-snap.2027-T1 Valid prediction for snap_scaffold_4-snap.2034-T1 Valid prediction for Augustus_model.g6654.t1 Valid prediction for snap_scaffold_4-snap.2029-T1 Valid prediction for CodingQuarry_transcript_48991-T1 Valid prediction for GeneMark_model.16535_t Valid prediction for Augustus_model.g6656.t1 Valid prediction for GeneMark_model.16516_t Valid prediction for snap_scaffold_4-snap.2046-T1 Valid prediction for GeneMark_model.16525_t Valid prediction for Augustus_model.g6652.t1 Valid prediction for snap_scaffold_4-snap.2048-T1 Valid prediction for GlimmerHMM_glimmerT_10159-T1 Valid prediction for Augustus_model.g6663.t1 Valid prediction for GlimmerHMM_glimmerT_10148-T1 Valid prediction for GeneMark_model.16533_t Valid prediction for GlimmerHMM_glimmerT_10145-T1 Valid prediction for GeneMark_model.16520_t Valid prediction for GeneMark_model.16505_t Valid prediction for GlimmerHMM_glimmerT_10167-T1 Valid prediction for snap_scaffold_4-snap.2031-T1 Valid prediction for GeneMark_model.16497_t Valid prediction for Augustus_model.g6670.t1 Valid prediction for GlimmerHMM_glimmerT_10161-T1 Valid prediction for GeneMark_model.16511_t Valid prediction for snap_scaffold_4-snap.2036-T1 Valid prediction for snap_scaffold_4-snap.2038-T1 Valid prediction for GeneMark_model.16522_t Valid prediction for GlimmerHMM_glimmerT_10169-T1 Valid prediction for GlimmerHMM_glimmerT_10155-T1 Valid prediction for GlimmerHMM_glimmerT_10151-T1 Valid prediction for GlimmerHMM_glimmerT_10164-T1 Valid prediction for GeneMark_model.16538_t Valid prediction for GeneMark_model.16523_t Valid prediction for snap_scaffold_4-snap.2041-T1 Valid prediction for GeneMark_model.16507_t Valid prediction for snap_scaffold_4-snap.2030-T1 Valid prediction for HiQ_model.g6661.t1 Valid prediction for GlimmerHMM_glimmerT_10144-T1 Valid prediction for GeneMark_model.16514_t Valid prediction for snap_scaffold_4-snap.2054-T1 Valid prediction for Augustus_model.g6658.t1 Valid prediction for GeneMark_model.16527_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2040-T1 Valid prediction for GeneMark_model.16524_t Valid prediction for GeneMark_model.16530_t Valid prediction for snap_scaffold_4-snap.2022-T1 Valid prediction for GeneMark_model.16506_t Valid prediction for snap_scaffold_4-snap.2042-T1 Valid prediction for snap_scaffold_4-snap.2026-T1 Valid prediction for GeneMark_model.16515_t Valid prediction for GeneMark_model.16501_t Valid prediction for snap_scaffold_4-snap.2049-T1 Valid prediction for Augustus_model.g6666.t1 Valid prediction for Augustus_model.g6655.t1 Valid prediction for GlimmerHMM_glimmerT_10162-T1 Valid prediction for GlimmerHMM_glimmerT_10168-T1 Valid prediction for GeneMark_model.16512_t Valid prediction for GlimmerHMM_glimmerT_10165-T1 Valid prediction for GeneMark_model.16500_t Valid prediction for GeneMark_model.16510_t Valid prediction for snap_scaffold_4-snap.2024-T1 Valid prediction for snap_scaffold_4-snap.2053-T1 Valid prediction for GeneMark_model.16498_t Valid prediction for snap_scaffold_4-snap.2045-T1 Valid prediction for GlimmerHMM_glimmerT_10154-T1 Valid prediction for GlimmerHMM_glimmerT_10172-T1 Valid prediction for GlimmerHMM_glimmerT_10149-T1 Valid prediction for GlimmerHMM_glimmerT_10153-T1 Valid prediction for GeneMark_model.16496_t Valid prediction for GeneMark_model.16503_t Valid prediction for Augustus_model.g6669.t1 Valid prediction for Augustus_model.g6664.t1 Valid prediction for GlimmerHMM_glimmerT_10166-T1 Valid prediction for snap_scaffold_4-snap.2039-T1 Valid prediction for snap_scaffold_4-snap.2033-T1 Valid prediction for GeneMark_model.16528_t Valid prediction for GeneMark_model.16536_t Valid prediction for GeneMark_model.16526_t Valid prediction for GeneMark_model.16519_t Valid prediction for Augustus_model.g6657.t1 Valid prediction for snap_scaffold_4-snap.2025-T1 Valid prediction for GeneMark_model.16532_t Valid prediction for snap_scaffold_4-snap.2043-T1 Valid prediction for GlimmerHMM_glimmerT_10163-T1 Valid prediction for GlimmerHMM_glimmerT_10150-T1 Valid prediction for snap_scaffold_4-snap.2055-T1 Valid prediction for GeneMark_model.16521_t Valid prediction for snap_scaffold_4-snap.2052-T1 Valid prediction for GlimmerHMM_glimmerT_10174-T1 Valid prediction for snap_scaffold_4-snap.2047-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.16517_t Valid prediction for Augustus_model.g6653.t1 Valid prediction for GeneMark_model.16534_t Valid prediction for Augustus_model.g6668.t1 Valid prediction for GlimmerHMM_glimmerT_10146-T1 Valid prediction for snap_scaffold_4-snap.2035-T1 Valid prediction for GlimmerHMM_glimmerT_10147-T1 Valid prediction for Augustus_model.g6659.t1 Valid prediction for Augustus_model.g6667.t1 Valid prediction for snap_scaffold_4-snap.2032-T1 Valid prediction for GlimmerHMM_glimmerT_10170-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9205, rend_intergenic: 6506 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27765, rend_intergenic: 25952 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53046, rend_intergenic: 48827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64794, rend_intergenic: 62136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84615, rend_intergenic: 78843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93910, rend_intergenic: 84768 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103095, rend_intergenic: 94638 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104034, rend_intergenic: 103715 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119736, rend_intergenic: 104635 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122065, rend_intergenic: 119938 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123664, rend_intergenic: 123602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126810, rend_intergenic: 124432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127520, rend_intergenic: 127149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132660, rend_intergenic: 127721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151282, rend_intergenic: 146080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 155814 -exon list size: 638 building trellis 0.2 0.3 0.5 0.6 0.8 0.9 1.1 1.2 1.4 1.6 1.7 1.9 2.0 2.2 2.3 2.5 2.7 2.8 3.0 3.1 3.3 3.4 3.6 3.8 3.9 4.1 4.2 4.4 4.5 4.7 4.8 5.0 5.2 5.3 5.5 5.6 5.8 5.9 6.1 6.2 6.4 6.6 6.7 6.9 7.0 7.2 7.3 7.5 7.7 7.8 8.0 8.1 8.3 8.4 8.6 8.8 8.9 9.1 9.2 9.4 9.5 9.7 9.8 10.0 10.2 10.3 10.5 10.6 10.8 10.9 11.1 11.2 11.4 11.6 11.7 11.9 12.0 12.2 12.3 12.5 12.7 12.8 13.0 13.1 13.3 13.4 13.6 13.8 13.9 14.1 14.2 14.4 14.5 14.7 14.8 15.0 15.2 15.3 15.5 15.6 15.8 15.9 16.1 16.2 16.4 16.6 16.7 16.9 17.0 17.2 17.3 17.5 17.7 17.8 18.0 18.1 18.3 18.4 18.6 18.8 18.9 19.1 19.2 19.4 19.5 19.7 19.8 20.0 20.2 20.3 20.5 20.6 20.8 20.9 21.1 21.2 21.4 21.6 21.7 21.9 22.0 22.2 22.3 22.5 22.7 22.8 23.0 23.1 23.3 23.4 23.6 23.8 23.9 24.1 24.2 24.4 24.5 24.7 24.8 25.0 25.2 25.3 25.5 25.6 25.8 25.9 26.1 26.2 26.4 26.6 26.7 26.9 27.0 27.2 27.3 27.5 27.7 27.8 28.0 28.1 28.3 28.4 28.6 28.7 28.9 29.1 29.2 29.4 29.5 29.7 29.8 30.0 30.2 30.3 30.5 30.6 30.8 30.9 31.1 31.2 31.4 31.6 31.7 31.9 32.0 32.2 32.3 32.5 32.7 32.8 33.0 33.1 33.3 33.4 33.6 33.8 33.9 34.1 34.2 34.4 34.5 34.7 34.8 35.0 35.2 35.3 35.5 35.6 35.8 35.9 36.1 36.2 36.4 36.6 36.7 36.9 37.0 37.2 37.3 37.5 37.7 37.8 38.0 38.1 38.3 38.4 38.6 38.8 38.9 39.1 39.2 39.4 39.5 39.7 39.8 40.0 40.2 40.3 40.5 40.6 40.8 40.9 41.1 41.2 41.4 41.6 41.7 41.9 42.0 42.2 42.3 42.5 42.7 42.8 43.0 43.1 43.3 43.4 43.6 43.8 43.9 44.1 44.2 44.4 44.5 44.7 44.8 45.0 45.2 45.3 45.5 45.6 45.8 45.9 46.1 46.2 46.4 46.6 46.7 46.9 47.0 47.2 47.3 47.5 47.7 47.8 48.0 48.1 48.3 48.4 48.6 48.8 48.9 49.1 49.2 49.4 49.5 49.7 49.8 50.0 50.2 50.3 50.5 50.6 50.8 50.9 51.1 51.2 51.4 51.6 51.7 51.9 52.0 52.2 52.3 52.5 52.7 52.8 53.0 53.1 53.3 53.4 53.6 53.8 53.9 54.1 54.2 54.4 54.5 54.7 54.8 55.0 55.2 55.3 55.5 55.6 55.8 55.9 56.1 56.2 56.4 56.6 56.7 56.9 57.0 57.2 57.3 57.5 57.7 57.8 58.0 58.1 58.3 58.4 58.6 58.8 58.9 59.1 59.2 59.4 59.5 59.7 59.8 60.0 60.2 60.3 60.5 60.6 60.8 60.9 61.1 61.3 61.4 61.6 61.7 61.9 62.0 62.2 62.3 62.5 62.7 62.8 63.0 63.1 63.3 63.4 63.6 63.7 63.9 64.1 64.2 64.4 64.5 64.7 64.8 65.0 65.2 65.3 65.5 65.6 65.8 65.9 66.1 66.2 66.4 66.6 66.7 66.9 67.0 67.2 67.3 67.5 67.7 67.8 68.0 68.1 68.3 68.4 68.6 68.8 68.9 69.1 69.2 69.4 69.5 69.7 69.8 70.0 70.2 70.3 70.5 70.6 70.8 70.9 71.1 71.2 71.4 71.6 71.7 71.9 72.0 72.2 72.3 72.5 72.7 72.8 73.0 73.1 73.3 73.4 73.6 73.8 73.9 74.1 74.2 74.4 74.5 74.7 74.8 75.0 75.2 75.3 75.5 75.6 75.8 75.9 76.1 76.2 76.4 76.6 76.7 76.9 77.0 77.2 77.3 77.5 77.7 77.8 78.0 78.1 78.3 78.4 78.6 78.8 78.9 79.1 79.2 79.4 79.5 79.7 79.8 80.0 80.2 80.3 80.5 80.6 80.8 80.9 81.1 81.2 81.4 81.6 81.7 81.9 82.0 82.2 82.3 82.5 82.7 82.8 83.0 83.1 83.3 83.4 83.6 83.8 83.9 84.1 84.2 84.4 84.5 84.7 84.8 85.0 85.2 85.3 85.5 85.6 85.8 85.9 86.1 86.2 86.4 86.6 86.7 86.9 87.0 87.2 87.3 87.5 87.7 87.8 88.0 88.1 88.3 88.4 88.6 88.8 88.9 89.1 89.2 89.4 89.5 89.7 89.8 90.0 90.2 90.3 90.5 90.6 90.8 90.9 91.1 91.2 91.4 91.6 91.7 91.9 92.0 92.2 92.3 92.5 92.7 92.8 93.0 93.1 93.3 93.4 93.6 93.8 93.9 94.1 94.2 94.4 94.5 94.7 94.8 95.0 95.2 95.3 95.5 95.6 95.8 95.9 96.1 96.2 96.4 96.6 96.7 96.9 97.0 97.2 97.3 97.5 97.7 97.8 98.0 98.1 98.3 98.4 98.6 98.8 98.9 99.1 99.2 99.4 99.5 99.7 99.8 -found 36 predictions from path traversal Error with prediction: snap lend_intergenic: 9205, rend_intergenic: 6506 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27765, rend_intergenic: 25952 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53046, rend_intergenic: 48827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 64794, rend_intergenic: 62136 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84615, rend_intergenic: 78843 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93910, rend_intergenic: 84768 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103095, rend_intergenic: 94638 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104034, rend_intergenic: 103715 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 119736, rend_intergenic: 104635 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122065, rend_intergenic: 119938 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123664, rend_intergenic: 123602 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126810, rend_intergenic: 124432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127520, rend_intergenic: 127149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132660, rend_intergenic: 127721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151282, rend_intergenic: 146080 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support