-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_7143127-7372968

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.15983_t
Valid prediction for GeneMark_model.15990_t
Valid prediction for Augustus_model.g6437.t1
Valid prediction for GlimmerHMM_glimmerT_9815-T1
Couldn't classify 219615, 219698
Couldn't classify 220408, 220529
Sorry, prediction pasa_asmbl_42827.p1 fails validation.
(CGC)	 TC	219615-219698	GT	AGG
(GTT)	 AG	220106-220265	GT	AGG
(ACC)	 AG	220408-220529	GG	GAG
-recovered pasa_asmbl_42827.p1, internal, 220106, 220265
Valid prediction for GlimmerHMM_glimmerT_9829-T1
Valid prediction for Augustus_model.g6433.t1
Valid prediction for GlimmerHMM_glimmerT_9818-T1
Valid prediction for Augustus_model.g6434.t1
Valid prediction for snap_scaffold_4-snap.1528-T1
Valid prediction for snap_scaffold_4-snap.1519-T1
Couldn't classify 216241, 216311
Couldn't classify 217094, 217174
Sorry, prediction pasa_asmbl_43564.p2 fails validation.
(GCC)	 CA	216241-216311	GT	AGG
(CTC)	 AG	216733-216892	GT	AAG
(GCA)	 AG	217094-217174	AA	ACA
-recovered pasa_asmbl_43564.p2, internal, 216733, 216892
Valid prediction for GeneMark_model.15961_t
Valid prediction for GeneMark_model.15952_t
Valid prediction for GeneMark_model.15981_t
Valid prediction for snap_scaffold_4-snap.1566-T1
Valid prediction for GeneMark_model.15975_t
Valid prediction for GeneMark_model.15955_t
Valid prediction for Augustus_model.g6423.t1
Couldn't classify 122435, 122435
Sorry, prediction CodingQuarry_transcript_48943-T1 fails validation.
(AGT)	 TG	122435-122435	GT	GAG
(TGC)	 AG	123504-123606	GT	AGG
(GTC)	 AG	124090-124162	GC	GAG
-recovered CodingQuarry_transcript_48943-T1, terminal, 124090, 124162
-recovered CodingQuarry_transcript_48943-T1, internal, 123504, 123606
-recovered CodingQuarry_transcript_48943-T1, internal, 124090, 124162
Valid prediction for GlimmerHMM_glimmerT_9827-T1
Valid prediction for GlimmerHMM_glimmerT_9828-T1
Valid prediction for snap_scaffold_4-snap.1526-T1
Valid prediction for CodingQuarry_transcript_48938-T1
Valid prediction for CodingQuarry_transcript_48937-T1
Valid prediction for HiQ_model.g6447.t1
Valid prediction for GlimmerHMM_glimmerT_9834-T1
Couldn't classify 116741, 116797
Sorry, prediction pasa_asmbl_42817.p1 fails validation.
(GAA)	 AA	116741-116797	GT	AGG
(CTG)	 AG	117149-117286	GT	TGG
(GAC)	 AG	118276-118352	GT	AAG
(GCT)	 AG	118563-118796	GT	GGG
(GTC)	 AG	119412-119907	TC	AGT
-recovered pasa_asmbl_42817.p1, terminal, 119412, 119907
-recovered pasa_asmbl_42817.p1, internal, 117149, 117286
-recovered pasa_asmbl_42817.p1, internal, 118276, 118352
-recovered pasa_asmbl_42817.p1, internal, 118563, 118796
Valid prediction for Augustus_model.g6428.t1
Valid prediction for snap_scaffold_4-snap.1540-T1
Valid prediction for pasa_asmbl_42807.p1
Valid prediction for GeneMark_model.15998_t
Valid prediction for CodingQuarry_transcript_48939-T1
Valid prediction for snap_scaffold_4-snap.1537-T1
Valid prediction for CodingQuarry_transcript_48935-T1
Valid prediction for GeneMark_model.16008_t
Valid prediction for snap_scaffold_4-snap.1524-T1
Valid prediction for GeneMark_model.15985_t
Valid prediction for snap_scaffold_4-snap.1542-T1
Valid prediction for GlimmerHMM_glimmerT_9844-T1
Valid prediction for Augustus_model.g6420.t1
Valid prediction for GeneMark_model.15994_t
Valid prediction for GlimmerHMM_glimmerT_9842-T1
Valid prediction for snap_scaffold_4-snap.1518-T1
Valid prediction for GeneMark_model.16002_t
Valid prediction for snap_scaffold_4-snap.1551-T1
Valid prediction for GlimmerHMM_glimmerT_9840-T1
Couldn't classify 116076, 116206
Sorry, prediction pasa_asmbl_42814.p1 fails validation.
(ATG)	 GT	113832-113948	GT	AGG
(AAA)	 AG	114439-114555	GT	AGG
(GTG)	 AG	114805-114905	GT	CCG
(CAT)	 AG	115330-115438	GT	AGG
(GCA)	 AG	115750-115828	GT	GAG
(AGG)	 AG	116076-116206	GT	CTG
-recovered pasa_asmbl_42814.p1, initial, 113832, 113948
-recovered pasa_asmbl_42814.p1, terminal, 115750, 115828
-recovered pasa_asmbl_42814.p1, internal, 114439, 114555
-recovered pasa_asmbl_42814.p1, internal, 114805, 114905
-recovered pasa_asmbl_42814.p1, internal, 115330, 115438
-recovered pasa_asmbl_42814.p1, internal, 115750, 115828
-recovered pasa_asmbl_42814.p1, internal, 116076, 116206
Valid prediction for GeneMark_model.15965_t
Valid prediction for GeneMark_model.15967_t
Valid prediction for GlimmerHMM_glimmerT_9816-T1
Valid prediction for Augustus_model.g6431.t1
Valid prediction for Augustus_model.g6435.t1
Valid prediction for GeneMark_model.15977_t
Valid prediction for GlimmerHMM_glimmerT_9820-T1
Valid prediction for Augustus_model.g6441.t1
Valid prediction for snap_scaffold_4-snap.1558-T1
Valid prediction for CodingQuarry_transcript_48936-T1
Valid prediction for GlimmerHMM_glimmerT_9843-T1
Valid prediction for GeneMark_model.15970_t
Valid prediction for snap_scaffold_4-snap.1552-T1
Valid prediction for GeneMark_model.15957_t
Valid prediction for snap_scaffold_4-snap.1534-T1
Valid prediction for snap_scaffold_4-snap.1546-T1
Valid prediction for snap_scaffold_4-snap.1515-T1
Valid prediction for Augustus_model.g6448.t1
Valid prediction for GeneMark_model.15973_t
Valid prediction for snap_scaffold_4-snap.1553-T1
Valid prediction for GeneMark_model.15989_t
Valid prediction for GeneMark_model.15958_t
Couldn't classify 221295, 221913
Sorry, prediction pasa_asmbl_42828.p1 fails validation.
(GTC)	 GA	221295-221913	GT	AGG
(AGA)	 AG	222038-222171	GT	AGG
(GAG)	 AG	222282-222410	GT	AGG
(GAA)	 AG	222734-222766	TC	AGT
-recovered pasa_asmbl_42828.p1, terminal, 222734, 222766
-recovered pasa_asmbl_42828.p1, internal, 222038, 222171
-recovered pasa_asmbl_42828.p1, internal, 222282, 222410
Valid prediction for GeneMark_model.15971_t
Valid prediction for GeneMark_model.15968_t
Valid prediction for pasa_asmbl_42825.p1
Valid prediction for snap_scaffold_4-snap.1522-T1
Couldn't classify 163384, 163452
Sorry, prediction pasa_asmbl_42822.p1 fails validation.
(AAA)	 AA	163384-163452	GT	AGG
(ACT)	 AG	164092-164227	GT	CCG
(GTT)	 AG	164478-165163	CC	GAC
-recovered pasa_asmbl_42822.p1, terminal, 164478, 165163
-recovered pasa_asmbl_42822.p1, internal, 164092, 164227
Valid prediction for GeneMark_model.15993_t
Valid prediction for CodingQuarry_transcript_48947-T1
Valid prediction for snap_scaffold_4-snap.1567-T1
Valid prediction for Augustus_model.g6432.t1
Valid prediction for GlimmerHMM_glimmerT_9831-T1
Valid prediction for GlimmerHMM_glimmerT_9832-T1
Valid prediction for snap_scaffold_4-snap.1550-T1
Valid prediction for snap_scaffold_4-snap.1568-T1
Valid prediction for GeneMark_model.15992_t
Valid prediction for GeneMark_model.15963_t
Valid prediction for Augustus_model.g6449.t1
Valid prediction for snap_scaffold_4-snap.1548-T1
Valid prediction for GlimmerHMM_glimmerT_9826-T1
Valid prediction for Augustus_model.g6418.t1
Valid prediction for GlimmerHMM_glimmerT_9813-T1
Couldn't classify 213923, 214028
Couldn't classify 215913, 215943
Sorry, prediction pasa_asmbl_42826.p1 fails validation.
(GAT)	 AT	213923-214028	GT	CGG
(AGC)	 AG	214179-214296	GT	AGG
(AAG)	 AG	215117-215233	GT	AGG
(GTG)	 AG	215385-215493	GT	CGG
(GTG)	 AG	215638-215753	GT	AGG
(GGG)	 AG	215913-215943	GG	CAG
-recovered pasa_asmbl_42826.p1, internal, 214179, 214296
-recovered pasa_asmbl_42826.p1, internal, 215117, 215233
-recovered pasa_asmbl_42826.p1, internal, 215385, 215493
-recovered pasa_asmbl_42826.p1, internal, 215638, 215753
Valid prediction for GeneMark_model.15979_t
Valid prediction for GeneMark_model.15987_t
Valid prediction for snap_scaffold_4-snap.1532-T1
Couldn't classify 122297, 122435
Sorry, prediction pasa_asmbl_42815.p3 fails validation.
(CCA)	 CA	122297-122435	GT	GAG
(TGC)	 AG	123504-123606	GT	AGG
(GTC)	 AG	124090-124162	GC	GAG
-recovered pasa_asmbl_42815.p3, terminal, 124090, 124162
-recovered pasa_asmbl_42815.p3, internal, 123504, 123606
-recovered pasa_asmbl_42815.p3, internal, 124090, 124162
Valid prediction for GeneMark_model.15988_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.16005_t
Valid prediction for snap_scaffold_4-snap.1545-T1
Valid prediction for HiQ_model.g6445.t1
Valid prediction for GeneMark_model.16004_t
Valid prediction for GeneMark_model.15956_t
Valid prediction for snap_scaffold_4-snap.1554-T1
Valid prediction for GeneMark_model.15978_t
Valid prediction for snap_scaffold_4-snap.1530-T1
Valid prediction for Augustus_model.g6439.t1
Couldn't classify 61215, 61319
Sorry, prediction pasa_asmbl_41446.p1 fails validation.
(ATG)	 CC	49502-49708	GT	AGG
(GTT)	 AG	49902-50045	GT	ACG
(ACC)	 AG	50159-50315	GT	TGG
(ATA)	 AG	50423-50450	GT	ACG
(TGG)	 AG	50632-50746	GT	AGG
(GGT)	 AG	51295-51387	GT	TTG
(GGT)	 AG	51488-51551	GT	CTG
(ACC)	 AG	51647-51745	GT	TGG
(AAA)	 AG	51874-51977	GT	ATG
(GAT)	 AG	52059-52197	GT	GGG
(TGG)	 AG	52302-52420	GT	AGG
(GTG)	 AG	52611-52760	GT	ACG
(TAC)	 AG	52958-53128	GT	AGG
(CCA)	 AG	53298-53601	GT	GGG
(ATA)	 AG	53747-53811	GT	GAG
(GAG)	 AG	53939-54026	GT	AGG
(GTC)	 AG	54157-54274	GT	AGG
(ATA)	 AG	54355-54478	GT	AGG
(GTG)	 AG	54796-54932	GT	AGG
(AGA)	 AG	55205-55460	GT	CTG
(GAA)	 AG	55547-55789	GT	AGG
(GTT)	 AG	55878-56054	GT	ATG
(CTT)	 AG	56246-56391	GT	AAG
(GAA)	 AG	56777-56867	GT	AGG
(GCT)	 AG	57017-57406	GT	AGG
(GGC)	 AG	57671-57797	GT	CGG
(GTG)	 AG	57935-58053	GT	AGG
(GCT)	 AG	58170-58366	GT	AAG
(GAA)	 AG	58521-58704	GT	AGG
(GTT)	 AG	58875-59040	GT	ACG
(AGG)	 AG	59231-59355	GT	AGG
(GGA)	 AG	59461-59769	GT	AGG
(GAT)	 AG	60079-60282	GT	AGG
(AAT)	 AG	60383-60508	GT	ATG
(GCG)	 AG	60898-61068	GT	GAG
(GTG)	 AG	61215-61319	GT	AGG
-recovered pasa_asmbl_41446.p1, initial, 49502, 49708
-recovered pasa_asmbl_41446.p1, internal, 49902, 50045
-recovered pasa_asmbl_41446.p1, internal, 50159, 50315
-recovered pasa_asmbl_41446.p1, internal, 50423, 50450
-recovered pasa_asmbl_41446.p1, internal, 50632, 50746
-recovered pasa_asmbl_41446.p1, internal, 51295, 51387
-recovered pasa_asmbl_41446.p1, internal, 51488, 51551
-recovered pasa_asmbl_41446.p1, internal, 51647, 51745
-recovered pasa_asmbl_41446.p1, internal, 51874, 51977
-recovered pasa_asmbl_41446.p1, internal, 52059, 52197
-recovered pasa_asmbl_41446.p1, internal, 52302, 52420
-recovered pasa_asmbl_41446.p1, internal, 52611, 52760
-recovered pasa_asmbl_41446.p1, internal, 52958, 53128
-recovered pasa_asmbl_41446.p1, internal, 53298, 53601
-recovered pasa_asmbl_41446.p1, internal, 53747, 53811
-recovered pasa_asmbl_41446.p1, internal, 53939, 54026
-recovered pasa_asmbl_41446.p1, internal, 54157, 54274
-recovered pasa_asmbl_41446.p1, internal, 54355, 54478
-recovered pasa_asmbl_41446.p1, internal, 54796, 54932
-recovered pasa_asmbl_41446.p1, internal, 55205, 55460
-recovered pasa_asmbl_41446.p1, internal, 55547, 55789
-recovered pasa_asmbl_41446.p1, internal, 55878, 56054
-recovered pasa_asmbl_41446.p1, internal, 56246, 56391
-recovered pasa_asmbl_41446.p1, internal, 56777, 56867
-recovered pasa_asmbl_41446.p1, internal, 57017, 57406
-recovered pasa_asmbl_41446.p1, internal, 57671, 57797
-recovered pasa_asmbl_41446.p1, internal, 57935, 58053
-recovered pasa_asmbl_41446.p1, internal, 58170, 58366
-recovered pasa_asmbl_41446.p1, internal, 58521, 58704
-recovered pasa_asmbl_41446.p1, internal, 58875, 59040
-recovered pasa_asmbl_41446.p1, internal, 59231, 59355
-recovered pasa_asmbl_41446.p1, internal, 59461, 59769
-recovered pasa_asmbl_41446.p1, internal, 60079, 60282
-recovered pasa_asmbl_41446.p1, internal, 60383, 60508
-recovered pasa_asmbl_41446.p1, internal, 60898, 61068
-recovered pasa_asmbl_41446.p1, internal, 61215, 61319
Valid prediction for GeneMark_model.15959_t
Valid prediction for GeneMark_model.15966_t
Valid prediction for snap_scaffold_4-snap.1539-T1
Valid prediction for GeneMark_model.15982_t
Valid prediction for pasa_asmbl_42349.p1
Valid prediction for snap_scaffold_4-snap.1549-T1
Valid prediction for snap_scaffold_4-snap.1565-T1
Valid prediction for Augustus_model.g6438.t1
Valid prediction for GeneMark_model.15976_t
Valid prediction for snap_scaffold_4-snap.1520-T1
Valid prediction for GlimmerHMM_glimmerT_9814-T1
Valid prediction for snap_scaffold_4-snap.1523-T1
Valid prediction for snap_scaffold_4-snap.1564-T1
Valid prediction for snap_scaffold_4-snap.1516-T1
Valid prediction for GlimmerHMM_glimmerT_9817-T1
Valid prediction for snap_scaffold_4-snap.1544-T1
Valid prediction for Augustus_model.g6430.t1
Valid prediction for GlimmerHMM_glimmerT_9835-T1
Valid prediction for GeneMark_model.15996_t
Valid prediction for GeneMark_model.15953_t
Valid prediction for GeneMark_model.15964_t
Valid prediction for GlimmerHMM_glimmerT_9841-T1
Valid prediction for snap_scaffold_4-snap.1557-T1
Valid prediction for Augustus_model.g6427.t1
Valid prediction for GeneMark_model.15972_t
Valid prediction for snap_scaffold_4-snap.1527-T1
Valid prediction for GeneMark_model.16007_t
Valid prediction for snap_scaffold_4-snap.1521-T1
Valid prediction for snap_scaffold_4-snap.1517-T1
Valid prediction for Augustus_model.g6440.t1
Valid prediction for Augustus_model.g6425.t1
Valid prediction for GeneMark_model.15960_t
Couldn't classify 160605, 160775
Sorry, prediction pasa_asmbl_41441.p2 fails validation.
(ATC)	 GA	160605-160775	GT	AGG
(GAG)	 AG	162387-162514	GT	AGG
(CTG)	 AG	162891-162915	AA	GAA
-recovered pasa_asmbl_41441.p2, terminal, 162891, 162915
-recovered pasa_asmbl_41441.p2, internal, 162387, 162514
Valid prediction for GeneMark_model.15991_t
Valid prediction for GlimmerHMM_glimmerT_9830-T1
Valid prediction for Augustus_model.g6424.t1
Valid prediction for GlimmerHMM_glimmerT_9823-T1
Valid prediction for Augustus_model.g6442.t1
Valid prediction for GeneMark_model.15969_t
Valid prediction for GeneMark_model.15986_t
Valid prediction for snap_scaffold_4-snap.1541-T1
Valid prediction for snap_scaffold_4-snap.1538-T1
Valid prediction for snap_scaffold_4-snap.1535-T1
Valid prediction for CodingQuarry_transcript_48946-T1
Valid prediction for CodingQuarry_transcript_48945-T1
Valid prediction for GeneMark_model.15984_t
Valid prediction for GlimmerHMM_glimmerT_9812-T1
Valid prediction for pasa_asmbl_41450.p1
Valid prediction for GeneMark_model.15997_t
Valid prediction for snap_scaffold_4-snap.1547-T1
Valid prediction for HiQ_model.g6446.t1
Valid prediction for GeneMark_model.16000_t
Valid prediction for snap_scaffold_4-snap.1556-T1
Valid prediction for GlimmerHMM_glimmerT_9837-T1
Valid prediction for GeneMark_model.15980_t
Couldn't classify 167138, 167233
Couldn't classify 172315, 172334
Sorry, prediction pasa_asmbl_42399.p1 fails validation.
(ATC)	 GC	167138-167233	GT	AGG
(ATC)	 AG	169652-169708	GT	TGG
(ACT)	 AG	170022-170073	GT	AGG
(GTT)	 AG	170229-170323	GT	CCG
(GTG)	 AG	171753-171804	GT	CGG
(TGG)	 AG	172315-172334	TT	GCT
add_exon() Sorry, pasa_asmbl_42399.p1 170022-170073-terminal-3 is invalid.
-recovered pasa_asmbl_42399.p1, terminal, 170022, 170073
-recovered pasa_asmbl_42399.p1, internal, 169652, 169708
-recovered pasa_asmbl_42399.p1, internal, 170022, 170073
-recovered pasa_asmbl_42399.p1, internal, 170229, 170323
-recovered pasa_asmbl_42399.p1, internal, 171753, 171804
Valid prediction for Augustus_model.g6419.t1
Valid prediction for GeneMark_model.15999_t
Valid prediction for GeneMark_model.15962_t
Valid prediction for snap_scaffold_4-snap.1525-T1
Valid prediction for snap_scaffold_4-snap.1559-T1
Valid prediction for GlimmerHMM_glimmerT_9822-T1
Valid prediction for Augustus_model.g6421.t1
Valid prediction for GlimmerHMM_glimmerT_9821-T1
Valid prediction for GlimmerHMM_glimmerT_9824-T1
Valid prediction for GeneMark_model.15954_t
Valid prediction for snap_scaffold_4-snap.1555-T1
Valid prediction for snap_scaffold_4-snap.1560-T1
Valid prediction for GeneMark_model.15974_t
Valid prediction for GlimmerHMM_glimmerT_9825-T1
Valid prediction for GlimmerHMM_glimmerT_9836-T1
Valid prediction for snap_scaffold_4-snap.1533-T1
Valid prediction for snap_scaffold_4-snap.1536-T1
Valid prediction for snap_scaffold_4-snap.1531-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_48940-T1
Valid prediction for snap_scaffold_4-snap.1562-T1
Valid prediction for GlimmerHMM_glimmerT_9839-T1
Valid prediction for GlimmerHMM_glimmerT_9833-T1
Valid prediction for Augustus_model.g6422.t1
Valid prediction for GlimmerHMM_glimmerT_9819-T1
Valid prediction for snap_scaffold_4-snap.1543-T1
Valid prediction for snap_scaffold_4-snap.1563-T1
Valid prediction for GeneMark_model.16001_t
Valid prediction for GeneMark_model.16003_t
Valid prediction for GeneMark_model.15995_t
Valid prediction for snap_scaffold_4-snap.1561-T1
Valid prediction for Augustus_model.g6436.t1
Valid prediction for snap_scaffold_4-snap.1529-T1
Valid prediction for Augustus_model.g6429.t1
Valid prediction for Augustus_model.g6443.t1
Valid prediction for Augustus_model.g6426.t1
Valid prediction for GlimmerHMM_glimmerT_9838-T1
Valid prediction for Augustus_model.g6444.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12009, rend_intergenic: 8848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21276, rend_intergenic: 13767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34169, rend_intergenic: 27036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38066, rend_intergenic: 35729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42986, rend_intergenic: 39843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60503, rend_intergenic: 57241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66492, rend_intergenic: 62541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81807, rend_intergenic: 73002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99173, rend_intergenic: 93669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105367, rend_intergenic: 101371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111027, rend_intergenic: 109442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112455, rend_intergenic: 111942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118646, rend_intergenic: 113605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124162, rend_intergenic: 120858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 229842
-exon list size: 854


building trellis

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3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.6    
4.7    
4.8    
4.9    
5.0    
5.1    
5.3    
5.4    
5.5    
5.6    
5.7    
5.8    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.7    
6.8    
6.9    
7.0    
7.1    
7.2    
7.4    
7.5    
7.6    
7.7    
7.8    
7.9    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.8    
8.9    
9.0    
9.1    
9.2    
9.3    
9.5    
9.6    
9.7    
9.8    
9.9    
10.0    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.3    
12.4    
12.5    
12.6    
12.7    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.1    
25.2    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 12009, rend_intergenic: 8848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21276, rend_intergenic: 13767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34169, rend_intergenic: 27036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38066, rend_intergenic: 35729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42986, rend_intergenic: 39843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60503, rend_intergenic: 57241  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66492, rend_intergenic: 62541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81807, rend_intergenic: 73002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99173, rend_intergenic: 93669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105367, rend_intergenic: 101371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111027, rend_intergenic: 109442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112455, rend_intergenic: 111942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118646, rend_intergenic: 113605  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124162, rend_intergenic: 120858  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support