-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_6845191-7039925

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_9779-T1
Valid prediction for snap_scaffold_4-snap.1487-T1
Valid prediction for Augustus_model.g6393.t1
Valid prediction for GlimmerHMM_glimmerT_9781-T1
Valid prediction for GeneMark_model.15887_t
Valid prediction for GeneMark_model.15912_t
Valid prediction for GeneMark_model.15885_t
Couldn't classify 162311, 162363
Couldn't classify 171209, 171264
Sorry, prediction pasa_asmbl_42773.p1 fails validation.
(GCA)	 TA	162311-162363	GT	AGG
(GAG)	 AG	162497-162559	GT	GAG
(AAA)	 AG	163696-163750	GT	AGG
(GCT)	 AG	166029-166169	GT	GCG
(TCA)	 AG	166677-166754	GT	TGG
(CCG)	 AG	167021-167128	GT	AGG
(CCT)	 AG	167248-167365	GT	AGG
(CAG)	 AG	167490-167523	GT	AAG
(GGT)	 AG	168513-168571	GT	AGG
(AGA)	 AG	171209-171264	AG	CCA
-recovered pasa_asmbl_42773.p1, internal, 162497, 162559
-recovered pasa_asmbl_42773.p1, internal, 163696, 163750
-recovered pasa_asmbl_42773.p1, internal, 166029, 166169
-recovered pasa_asmbl_42773.p1, internal, 166677, 166754
-recovered pasa_asmbl_42773.p1, internal, 167021, 167128
-recovered pasa_asmbl_42773.p1, internal, 167248, 167365
-recovered pasa_asmbl_42773.p1, internal, 167490, 167523
-recovered pasa_asmbl_42773.p1, internal, 168513, 168571
Valid prediction for GeneMark_model.15894_t
Valid prediction for GeneMark_model.15910_t
Valid prediction for GeneMark_model.15926_t
Valid prediction for snap_scaffold_4-snap.1447-T1
Valid prediction for GlimmerHMM_glimmerT_9788-T1
Valid prediction for GlimmerHMM_glimmerT_9765-T1
Couldn't classify 174291, 174389
Couldn't classify 177615, 177817
Sorry, prediction pasa_asmbl_42776.p1 fails validation.
(GCC)	 CA	174291-174389	GT	CGG
(GAG)	 AG	175129-175213	GT	CCG
(TGA)	 AG	175951-176051	GT	AGG
(CTC)	 AG	176792-176907	GT	AGG
(AGA)	 AG	177038-177138	GT	AGG
(CGT)	 AG	177336-177425	GT	CGG
(GGG)	 AG	177615-177817	AG	TCA
-recovered pasa_asmbl_42776.p1, internal, 175129, 175213
-recovered pasa_asmbl_42776.p1, internal, 175951, 176051
-recovered pasa_asmbl_42776.p1, internal, 176792, 176907
-recovered pasa_asmbl_42776.p1, internal, 177038, 177138
-recovered pasa_asmbl_42776.p1, internal, 177336, 177425
Valid prediction for GeneMark_model.15905_t
Valid prediction for snap_scaffold_4-snap.1488-T1
Valid prediction for GeneMark_model.15921_t
Valid prediction for GlimmerHMM_glimmerT_9773-T1
Valid prediction for snap_scaffold_4-snap.1450-T1
Valid prediction for GlimmerHMM_glimmerT_9782-T1
Valid prediction for GeneMark_model.15878_t
Valid prediction for CodingQuarry_transcript_48926-T1
Valid prediction for GlimmerHMM_glimmerT_9766-T1
Valid prediction for snap_scaffold_4-snap.1479-T1
Valid prediction for snap_scaffold_4-snap.1461-T1
Valid prediction for snap_scaffold_4-snap.1478-T1
Valid prediction for snap_scaffold_4-snap.1451-T1
Valid prediction for CodingQuarry_transcript_48925-T1
Valid prediction for GeneMark_model.15900_t
Valid prediction for GlimmerHMM_glimmerT_9770-T1
Valid prediction for GeneMark_model.15908_t
Valid prediction for snap_scaffold_4-snap.1466-T1
Valid prediction for Augustus_model.g6408.t1
Valid prediction for Augustus_model.g6405.t1
Valid prediction for pasa_asmbl_42762.p1
Valid prediction for GlimmerHMM_glimmerT_9790-T1
Valid prediction for GeneMark_model.15884_t
Valid prediction for GlimmerHMM_glimmerT_9780-T1
Couldn't classify 708, 772
Sorry, prediction pasa_asmbl_42761.p1 fails validation.
(CTG)	 GT	708-772	GT	GGG
(GGT)	 AG	1163-1300	GT	AGG
(GGC)	 AG	1505-1619	GT	AGG
(CTG)	 AG	2293-2439	GT	AGG
(GTT)	 AG	2581-2769	GT	GCG
(GAG)	 AG	2936-3085	GT	AGG
(GCT)	 AG	3263-3397	GT	TCG
(ATC)	 AG	3648-3750	GT	AGG
(GCT)	 AG	4325-4390	GT	AGG
(GTC)	 AG	4494-4570	GA	AAG
add_exon() Sorry, pasa_asmbl_42761.p1 3648-3750-terminal-3 is invalid.
-recovered pasa_asmbl_42761.p1, terminal, 3648, 3750
-recovered pasa_asmbl_42761.p1, terminal, 4494, 4570
-recovered pasa_asmbl_42761.p1, internal, 1163, 1300
-recovered pasa_asmbl_42761.p1, internal, 1505, 1619
-recovered pasa_asmbl_42761.p1, internal, 2293, 2439
-recovered pasa_asmbl_42761.p1, internal, 2581, 2769
-recovered pasa_asmbl_42761.p1, internal, 2936, 3085
-recovered pasa_asmbl_42761.p1, internal, 3263, 3397
-recovered pasa_asmbl_42761.p1, internal, 3648, 3750
-recovered pasa_asmbl_42761.p1, internal, 4325, 4390
Valid prediction for snap_scaffold_4-snap.1468-T1
Valid prediction for GeneMark_model.15898_t
Valid prediction for GeneMark_model.15906_t
Valid prediction for GeneMark_model.15904_t
Valid prediction for Augustus_model.g6407.t1
Valid prediction for GeneMark_model.15916_t
Valid prediction for Augustus_model.g6406.t1
Valid prediction for GlimmerHMM_glimmerT_9796-T1
Valid prediction for GlimmerHMM_glimmerT_9772-T1
Valid prediction for GeneMark_model.15927_t
Valid prediction for snap_scaffold_4-snap.1445-T1
Valid prediction for snap_scaffold_4-snap.1485-T1
Valid prediction for GeneMark_model.15902_t
Valid prediction for snap_scaffold_4-snap.1480-T1
Valid prediction for GlimmerHMM_glimmerT_9795-T1
Valid prediction for GeneMark_model.15876_t
Valid prediction for GeneMark_model.15918_t
Valid prediction for Augustus_model.g6404.t1
Valid prediction for Augustus_model.g6402.t1
Valid prediction for CodingQuarry_transcript_48924-T1
Valid prediction for GeneMark_model.15880_t
Valid prediction for GeneMark_model.15888_t
Valid prediction for GlimmerHMM_glimmerT_9793-T1
Couldn't classify 184625, 184678
Sorry, prediction pasa_asmbl_42781.p1 fails validation.
(CCC)	 AC	184625-184678	GC	AGG
(CCA)	 AG	186707-186799	GT	AGG
(ATG)	 AG	186909-187025	GT	AGG
(GAC)	 AG	187149-187265	GT	TGG
(AAG)	 AG	189608-189670	GT	CAG
(ACA)	 AG	191146-191185	GT	AGG
(AAC)	 AG	191908-192011	GT	AGG
(CTC)	 AG	193751-193906	GT	AGG
(GAT)	 AG	194101-194181	GT	AGG
(ATC)	 AG	194409-194636	CT	AGC
-recovered pasa_asmbl_42781.p1, initial, 186909, 187025
-recovered pasa_asmbl_42781.p1, terminal, 194409, 194636
-recovered pasa_asmbl_42781.p1, internal, 186707, 186799
-recovered pasa_asmbl_42781.p1, internal, 186909, 187025
-recovered pasa_asmbl_42781.p1, internal, 187149, 187265
-recovered pasa_asmbl_42781.p1, internal, 189608, 189670
-recovered pasa_asmbl_42781.p1, internal, 191146, 191185
-recovered pasa_asmbl_42781.p1, internal, 191908, 192011
-recovered pasa_asmbl_42781.p1, internal, 193751, 193906
-recovered pasa_asmbl_42781.p1, internal, 194101, 194181
Valid prediction for Augustus_model.g6401.t1
Valid prediction for GlimmerHMM_glimmerT_9791-T1
Valid prediction for snap_scaffold_4-snap.1454-T1
Valid prediction for snap_scaffold_4-snap.1482-T1
Valid prediction for snap_scaffold_4-snap.1463-T1
Valid prediction for Augustus_model.g6395.t1
Valid prediction for GlimmerHMM_glimmerT_9785-T1
Valid prediction for snap_scaffold_4-snap.1477-T1
Valid prediction for Augustus_model.g6398.t1
Valid prediction for GlimmerHMM_glimmerT_9769-T1
Valid prediction for GeneMark_model.15892_t
Valid prediction for GlimmerHMM_glimmerT_9787-T1
Valid prediction for GlimmerHMM_glimmerT_9794-T1
Valid prediction for Augustus_model.g6400.t1
Valid prediction for GeneMark_model.15896_t
Valid prediction for GeneMark_model.15914_t
Valid prediction for HiQ_model.g6399.t1
Valid prediction for snap_scaffold_4-snap.1473-T1
Valid prediction for GeneMark_model.15909_t
Valid prediction for snap_scaffold_4-snap.1474-T1
Valid prediction for snap_scaffold_4-snap.1456-T1
Valid prediction for snap_scaffold_4-snap.1444-T1
Valid prediction for snap_scaffold_4-snap.1470-T1
Valid prediction for GlimmerHMM_glimmerT_9786-T1
Valid prediction for GlimmerHMM_glimmerT_9783-T1
Valid prediction for GlimmerHMM_glimmerT_9778-T1
Valid prediction for GlimmerHMM_glimmerT_9771-T1
Valid prediction for snap_scaffold_4-snap.1455-T1
Valid prediction for GlimmerHMM_glimmerT_9764-T1
Valid prediction for GeneMark_model.15875_t
Valid prediction for snap_scaffold_4-snap.1486-T1
Valid prediction for GeneMark_model.15882_t
Valid prediction for snap_scaffold_4-snap.1484-T1
Valid prediction for GlimmerHMM_glimmerT_9777-T1
Valid prediction for snap_scaffold_4-snap.1458-T1
Valid prediction for GlimmerHMM_glimmerT_9792-T1
Valid prediction for GlimmerHMM_glimmerT_9798-T1
Valid prediction for GeneMark_model.15923_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_9775-T1
Valid prediction for snap_scaffold_4-snap.1446-T1
Valid prediction for snap_scaffold_4-snap.1491-T1
Valid prediction for snap_scaffold_4-snap.1457-T1
Valid prediction for snap_scaffold_4-snap.1469-T1
Valid prediction for GeneMark_model.15877_t
Valid prediction for GeneMark_model.15913_t
Valid prediction for snap_scaffold_4-snap.1483-T1
Valid prediction for GeneMark_model.15899_t
Valid prediction for snap_scaffold_4-snap.1443-T1
Valid prediction for GeneMark_model.15903_t
Valid prediction for snap_scaffold_4-snap.1465-T1
Valid prediction for snap_scaffold_4-snap.1492-T1
Valid prediction for GeneMark_model.15917_t
Valid prediction for GeneMark_model.15925_t
Valid prediction for GeneMark_model.15919_t
Valid prediction for GeneMark_model.15890_t
Valid prediction for GeneMark_model.15889_t
Valid prediction for GeneMark_model.15881_t
Valid prediction for snap_scaffold_4-snap.1476-T1
Valid prediction for snap_scaffold_4-snap.1475-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.1490-T1
Valid prediction for snap_scaffold_4-snap.1448-T1
Valid prediction for snap_scaffold_4-snap.1467-T1
Valid prediction for snap_scaffold_4-snap.1471-T1
Valid prediction for GlimmerHMM_glimmerT_9776-T1
Valid prediction for GlimmerHMM_glimmerT_9767-T1
Valid prediction for snap_scaffold_4-snap.1460-T1
Valid prediction for Augustus_model.g6397.t1
Valid prediction for GeneMark_model.15879_t
Valid prediction for GeneMark_model.15895_t
Valid prediction for GeneMark_model.15911_t
Valid prediction for snap_scaffold_4-snap.1472-T1
Valid prediction for GeneMark_model.15920_t
Valid prediction for snap_scaffold_4-snap.1489-T1
Valid prediction for GlimmerHMM_glimmerT_9789-T1
Valid prediction for GlimmerHMM_glimmerT_9784-T1
Valid prediction for Augustus_model.g6394.t1
Valid prediction for snap_scaffold_4-snap.1459-T1
Valid prediction for GeneMark_model.15922_t
Valid prediction for GeneMark_model.15891_t
Valid prediction for snap_scaffold_4-snap.1453-T1
Valid prediction for GeneMark_model.15897_t
Valid prediction for snap_scaffold_4-snap.1449-T1
Valid prediction for GlimmerHMM_glimmerT_9774-T1
Valid prediction for Augustus_model.g6396.t1
Valid prediction for snap_scaffold_4-snap.1452-T1
Valid prediction for GlimmerHMM_glimmerT_9797-T1
Valid prediction for GeneMark_model.15915_t
Valid prediction for GeneMark_model.15901_t
Valid prediction for GeneMark_model.15924_t
Valid prediction for Augustus_model.g6403.t1
Valid prediction for snap_scaffold_4-snap.1481-T1
Valid prediction for GeneMark_model.15893_t
Valid prediction for snap_scaffold_4-snap.1462-T1
Valid prediction for GlimmerHMM_glimmerT_9768-T1
Valid prediction for GeneMark_model.15883_t
Valid prediction for GeneMark_model.15886_t
Valid prediction for snap_scaffold_4-snap.1464-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18887, rend_intergenic: 13043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22497, rend_intergenic: 21238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27238, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32911, rend_intergenic: 29345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51215, rend_intergenic: 46274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52995, rend_intergenic: 51304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64674, rend_intergenic: 54643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73069, rend_intergenic: 72668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76161, rend_intergenic: 73226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83047, rend_intergenic: 81500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85966, rend_intergenic: 83923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91062, rend_intergenic: 86481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104366, rend_intergenic: 99938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121052, rend_intergenic: 119267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155567, rend_intergenic: 147182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194636, rend_intergenic: 168224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194735
-exon list size: 803


building trellis

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53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 18887, rend_intergenic: 13043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22497, rend_intergenic: 21238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27238, rend_intergenic: 22579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32911, rend_intergenic: 29345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51215, rend_intergenic: 46274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52995, rend_intergenic: 51304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64674, rend_intergenic: 54643  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73069, rend_intergenic: 72668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76161, rend_intergenic: 73226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83047, rend_intergenic: 81500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85966, rend_intergenic: 83923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91062, rend_intergenic: 86481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104366, rend_intergenic: 99938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121052, rend_intergenic: 119267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155567, rend_intergenic: 147182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194636, rend_intergenic: 168224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support