-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_5052328-5310979

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_9548-T1
Valid prediction for HiQ_model.g6214.t1
Valid prediction for GeneMark_model.15619_t
Valid prediction for snap_scaffold_4-snap.1136-T1
Valid prediction for snap_scaffold_4-snap.1153-T1
Couldn't classify 126547, 126740
Sorry, prediction pasa_asmbl_42666.p1 fails validation.
(ATG)	 AG	126248-126449	GT	AGG
(TGG)	 AG	126547-126740	TG	GGT
-recovered pasa_asmbl_42666.p1, initial, 126248, 126449
-recovered pasa_asmbl_42666.p1, internal, 126248, 126449
Valid prediction for GlimmerHMM_glimmerT_9557-T1
Valid prediction for GlimmerHMM_glimmerT_9532-T1
Valid prediction for GeneMark_model.15642_t
Valid prediction for Augustus_model.g6210.t1
Valid prediction for GeneMark_model.15621_t
Valid prediction for GeneMark_model.15632_t
Valid prediction for GeneMark_model.15615_t
Valid prediction for Augustus_model.g6212.t1
Valid prediction for GeneMark_model.15631_t
Valid prediction for pasa_asmbl_42669.p1
Couldn't classify 26747, 26891
Sorry, prediction pasa_asmbl_42662.p1 fails validation.
(CAG)	 AG	26747-26891	GT	GGG
(GCT)	 AG	27385-28082	GA	AAG
-recovered pasa_asmbl_42662.p1, terminal, 27385, 28082
-recovered pasa_asmbl_42662.p1, internal, 26747, 26891
Valid prediction for GeneMark_model.15622_t
Valid prediction for pasa_asmbl_42667.p1
Valid prediction for GeneMark_model.15639_t
Valid prediction for snap_scaffold_4-snap.1134-T1
Valid prediction for Augustus_model.g6211.t1
Valid prediction for CodingQuarry_transcript_48876-T1
Valid prediction for Augustus_model.g6203.t1
Valid prediction for GeneMark_model.15634_t
Valid prediction for GeneMark_model.15645_t
Couldn't classify 31730, 31832
Couldn't classify 36297, 36409
Sorry, prediction pasa_asmbl_42664.p1 fails validation.
(ACT)	 TT	31730-31832	GT	AGG
(ATA)	 AG	32145-32250	GT	GGG
(TTA)	 AG	32383-32408	GT	AAG
(GTG)	 AG	32529-32624	GT	ATG
(GCA)	 AG	33548-33628	GT	GGG
(ATC)	 AG	33848-33931	GT	AGG
(ACA)	 AG	34207-34331	GT	AGG
(TTT)	 AG	34559-34622	GT	AGG
(ACA)	 AG	34722-34835	GT	AGG
(AGG)	 AG	35434-35502	GT	AGG
(TGA)	 AG	36297-36409	GT	AGG
-recovered pasa_asmbl_42664.p1, internal, 32145, 32250
-recovered pasa_asmbl_42664.p1, internal, 32383, 32408
-recovered pasa_asmbl_42664.p1, internal, 32529, 32624
-recovered pasa_asmbl_42664.p1, internal, 33548, 33628
-recovered pasa_asmbl_42664.p1, internal, 33848, 33931
-recovered pasa_asmbl_42664.p1, internal, 34207, 34331
-recovered pasa_asmbl_42664.p1, internal, 34559, 34622
-recovered pasa_asmbl_42664.p1, internal, 34722, 34835
-recovered pasa_asmbl_42664.p1, internal, 35434, 35502
-recovered pasa_asmbl_42664.p1, internal, 36297, 36409
Valid prediction for Augustus_model.g6206.t1
Valid prediction for snap_scaffold_4-snap.1150-T1
Valid prediction for GeneMark_model.15628_t
Valid prediction for GlimmerHMM_glimmerT_9538-T1
Valid prediction for Augustus_model.g6209.t1
Valid prediction for snap_scaffold_4-snap.1139-T1
Valid prediction for GlimmerHMM_glimmerT_9544-T1
Valid prediction for pasa_asmbl_42661.p1
Valid prediction for snap_scaffold_4-snap.1147-T1
Valid prediction for GlimmerHMM_glimmerT_9543-T1
Valid prediction for GlimmerHMM_glimmerT_9534-T1
Valid prediction for GeneMark_model.15626_t
Valid prediction for snap_scaffold_4-snap.1145-T1
Valid prediction for GlimmerHMM_glimmerT_9535-T1
Valid prediction for snap_scaffold_4-snap.1148-T1
Valid prediction for snap_scaffold_4-snap.1162-T1
Valid prediction for snap_scaffold_4-snap.1164-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g6202.t1
Couldn't classify 120440, 120685
Couldn't classify 121630, 121767
Sorry, prediction pasa_asmbl_43638.p1 fails validation.
(GGC)	 CA	120440-120685	GT	TGG
(GTG)	 AG	121630-121767	GT	AGG
-recovered pasa_asmbl_43638.p1, internal, 121630, 121767
Valid prediction for snap_scaffold_4-snap.1165-T1
Valid prediction for Augustus_model.g6201.t1
Valid prediction for GlimmerHMM_glimmerT_9550-T1
Couldn't classify 14735, 15380
Sorry, prediction pasa_asmbl_42660.p1 fails validation.
(TAC)	 CA	14735-15380	GT	GGG
(GAG)	 AG	16118-16392	GA	GAG
-recovered pasa_asmbl_42660.p1, terminal, 16118, 16392
Valid prediction for snap_scaffold_4-snap.1138-T1
Valid prediction for CodingQuarry_transcript_48873-T1
Valid prediction for snap_scaffold_4-snap.1137-T1
Valid prediction for GlimmerHMM_glimmerT_9547-T1
Valid prediction for snap_scaffold_4-snap.1149-T1
Valid prediction for GeneMark_model.15617_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_9562-T1
Valid prediction for GeneMark_model.15627_t
Valid prediction for HiQ_model.g6205.t1
Valid prediction for CodingQuarry_transcript_48871-T1
Valid prediction for GlimmerHMM_glimmerT_9540-T1
Valid prediction for HiQ_model.g6220.t1
Valid prediction for Augustus_model.g6224.t1
Valid prediction for GlimmerHMM_glimmerT_9552-T1
Valid prediction for GlimmerHMM_glimmerT_9542-T1
Valid prediction for HiQ_model.g6217.t1
Valid prediction for snap_scaffold_4-snap.1143-T1
Valid prediction for GlimmerHMM_glimmerT_9553-T1
Valid prediction for GlimmerHMM_glimmerT_9539-T1
Valid prediction for HiQ_model.g6213.t1
Valid prediction for snap_scaffold_4-snap.1155-T1
Valid prediction for pasa_asmbl_41292.p1
Valid prediction for HiQ_model.g6218.t1
Valid prediction for CodingQuarry_transcript_48875-T1
Couldn't classify 74729, 75575
Sorry, prediction CodingQuarry_transcript_48881-T1 fails validation.
(ATG)	 AC	74729-75575	TC	AGT
(CCC)	 AG	75664-75857	GT	GGG
(GGA)	 AG	75979-76047	AG	GAA
-recovered CodingQuarry_transcript_48881-T1, terminal, 75979, 76047
-recovered CodingQuarry_transcript_48881-T1, internal, 75664, 75857
Valid prediction for snap_scaffold_4-snap.1171-T1
Valid prediction for GeneMark_model.15623_t
Valid prediction for snap_scaffold_4-snap.1156-T1
Valid prediction for GlimmerHMM_glimmerT_9546-T1
Valid prediction for snap_scaffold_4-snap.1172-T1
Valid prediction for GlimmerHMM_glimmerT_9537-T1
Valid prediction for GlimmerHMM_glimmerT_9545-T1
Valid prediction for CodingQuarry_transcript_48882-T1
Valid prediction for GeneMark_model.15635_t
Valid prediction for snap_scaffold_4-snap.1140-T1
Valid prediction for pasa_asmbl_41303.p1
Valid prediction for snap_scaffold_4-snap.1141-T1
Valid prediction for GlimmerHMM_glimmerT_9558-T1
Valid prediction for snap_scaffold_4-snap.1174-T1
Couldn't classify 15500, 16135
Sorry, prediction pasa_asmbl_41330.p1 fails validation.
(CAG)	 AG	15500-16135	CA	TGC
Valid prediction for snap_scaffold_4-snap.1159-T1
Valid prediction for Augustus_model.g6208.t1
Valid prediction for snap_scaffold_4-snap.1157-T1
Valid prediction for GeneMark_model.15620_t
Couldn't classify 16730, 16780
Sorry, prediction pasa_asmbl_41329.p1 fails validation.
(GAG)	 TG	16730-16780	GT	ATG
(GAG)	 AG	17216-17305	GT	AGG
(AAC)	 AG	17804-18028	GT	ATG
(GTC)	 AG	18476-18646	GT	AGG
(ACG)	 AG	18779-18956	GT	GGG
(AGT)	 AG	19144-19260	GT	TGG
(AGT)	 AG	19964-20248	GT	GAG
(TCA)	 AG	20489-20721	GT	CAG
(CTA)	 AG	21721-21726	AG	GAA
-recovered pasa_asmbl_41329.p1, terminal, 19964, 20248
-recovered pasa_asmbl_41329.p1, terminal, 21721, 21726
-recovered pasa_asmbl_41329.p1, internal, 17216, 17305
-recovered pasa_asmbl_41329.p1, internal, 17804, 18028
-recovered pasa_asmbl_41329.p1, internal, 18476, 18646
-recovered pasa_asmbl_41329.p1, internal, 18779, 18956
-recovered pasa_asmbl_41329.p1, internal, 19144, 19260
-recovered pasa_asmbl_41329.p1, internal, 19964, 20248
-recovered pasa_asmbl_41329.p1, internal, 20489, 20721
Valid prediction for GlimmerHMM_glimmerT_9549-T1
Valid prediction for snap_scaffold_4-snap.1161-T1
Valid prediction for CodingQuarry_transcript_48880-T1
Valid prediction for Augustus_model.g6222.t1
Valid prediction for CodingQuarry_transcript_48872-T1
Valid prediction for GeneMark_model.15641_t
Valid prediction for snap_scaffold_4-snap.1144-T1
Valid prediction for CodingQuarry_transcript_48878-T1
Valid prediction for GeneMark_model.15630_t
Valid prediction for GlimmerHMM_glimmerT_9533-T1
Valid prediction for GlimmerHMM_glimmerT_9560-T1
Valid prediction for CodingQuarry_transcript_48879-T1
Valid prediction for GlimmerHMM_glimmerT_9556-T1
Valid prediction for pasa_asmbl_41312.p1
Valid prediction for GlimmerHMM_glimmerT_9559-T1
Valid prediction for GlimmerHMM_glimmerT_9536-T1
Valid prediction for GeneMark_model.15633_t
Valid prediction for snap_scaffold_4-snap.1167-T1
Valid prediction for snap_scaffold_4-snap.1146-T1
Valid prediction for pasa_asmbl_41299.p1
Valid prediction for GlimmerHMM_glimmerT_9555-T1
Valid prediction for CodingQuarry_transcript_48874-T1
Valid prediction for snap_scaffold_4-snap.1168-T1
Valid prediction for snap_scaffold_4-snap.1169-T1
Valid prediction for GlimmerHMM_glimmerT_9551-T1
Valid prediction for snap_scaffold_4-snap.1163-T1
Valid prediction for snap_scaffold_4-snap.1154-T1
Couldn't classify 89672, 89836
Sorry, prediction pasa_asmbl_41307.p1 fails validation.
(ATG)	 CC	88644-88809	GT	AGG
(ATC)	 AG	89319-89440	GT	AGG
(GTC)	 AG	89672-89836	AG	AGA
-recovered pasa_asmbl_41307.p1, initial, 88644, 88809
-recovered pasa_asmbl_41307.p1, internal, 89319, 89440
Valid prediction for GeneMark_model.15629_t
Valid prediction for Augustus_model.g6219.t1
Valid prediction for snap_scaffold_4-snap.1173-T1
Valid prediction for Augustus_model.g6216.t1
Valid prediction for Augustus_model.g6207.t1
Valid prediction for snap_scaffold_4-snap.1160-T1
Couldn't classify 10382, 10476
Couldn't classify 14687, 14755
Sorry, prediction pasa_asmbl_41331.p1 fails validation.
(CTC)	 TG	10382-10476	GT	CGG
(GAG)	 AG	10746-10839	GT	AGG
(GCA)	 AG	11441-11527	GT	AGG
(ACT)	 AG	12828-12944	GT	AGG
(AAA)	 AG	13142-13240	GT	AGG
(GAG)	 AG	13489-13631	GT	AGG
(GGA)	 AG	14355-14493	GT	AGG
(ATC)	 AG	14687-14755	GG	TGG
-recovered pasa_asmbl_41331.p1, internal, 10746, 10839
-recovered pasa_asmbl_41331.p1, internal, 11441, 11527
-recovered pasa_asmbl_41331.p1, internal, 12828, 12944
-recovered pasa_asmbl_41331.p1, internal, 13142, 13240
-recovered pasa_asmbl_41331.p1, internal, 13489, 13631
-recovered pasa_asmbl_41331.p1, internal, 14355, 14493
Valid prediction for GlimmerHMM_glimmerT_9541-T1
Couldn't classify 63714, 63724
Couldn't classify 69194, 69321
Sorry, prediction pasa_asmbl_41318.p1 fails validation.
(ACT)	 GG	63714-63724	GT	AGG
(GGA)	 AG	63935-64097	GT	AGG
(CGT)	 AG	64488-64631	GT	TGG
(TAT)	 AG	65070-65222	GT	AGG
(GTT)	 AG	65399-65563	GT	GGG
(GTG)	 AG	65795-65968	GT	AGG
(GAC)	 AG	66069-66220	GT	AGG
(GTG)	 AG	66434-66566	GT	AGG
(GGT)	 AG	66698-66844	GT	AGG
(AGA)	 AG	67698-67730	GT	AGG
(GAG)	 AG	68857-68956	GT	CGG
(AGA)	 AG	69194-69321	TG	GGT
-recovered pasa_asmbl_41318.p1, internal, 63935, 64097
-recovered pasa_asmbl_41318.p1, internal, 64488, 64631
-recovered pasa_asmbl_41318.p1, internal, 65070, 65222
-recovered pasa_asmbl_41318.p1, internal, 65399, 65563
-recovered pasa_asmbl_41318.p1, internal, 65795, 65968
-recovered pasa_asmbl_41318.p1, internal, 66069, 66220
-recovered pasa_asmbl_41318.p1, internal, 66434, 66566
-recovered pasa_asmbl_41318.p1, internal, 66698, 66844
-recovered pasa_asmbl_41318.p1, internal, 67698, 67730
-recovered pasa_asmbl_41318.p1, internal, 68857, 68956
Valid prediction for GlimmerHMM_glimmerT_9554-T1
Valid prediction for Augustus_model.g6215.t1
Valid prediction for Augustus_model.g6221.t1
Valid prediction for snap_scaffold_4-snap.1152-T1
Couldn't classify 7097, 7496
Couldn't classify 9861, 9874
Sorry, prediction pasa_asmbl_41333.p1 fails validation.
(CTG)	 TC	7097-7496	GT	AGG
(GGA)	 AG	9861-9874	AT	GGA
Valid prediction for HiQ_model.g6223.t1
Valid prediction for snap_scaffold_4-snap.1170-T1
Valid prediction for Augustus_model.g6204.t1
Valid prediction for GeneMark_model.15636_t
Valid prediction for snap_scaffold_4-snap.1175-T1
Couldn't classify 92797, 93039
Sorry, prediction pasa_asmbl_41305.p1 fails validation.
(GAG)	 AG	92797-93039	GT	AGG
(GTC)	 AG	93181-93256	GT	AGG
(GCG)	 AG	93360-93500	GT	TGG
(ATG)	 AG	93628-93717	GT	TGG
(GTA)	 AG	93811-93874	GT	AGG
(GAC)	 AG	93985-94144	GT	CAG
(GAA)	 AG	94397-94504	GG	GAG
add_exon() Sorry, pasa_asmbl_41305.p1 93628-93717-initial-1 is invalid.
-recovered pasa_asmbl_41305.p1, initial, 93628, 93717
-recovered pasa_asmbl_41305.p1, terminal, 94397, 94504
-recovered pasa_asmbl_41305.p1, internal, 92797, 93039
-recovered pasa_asmbl_41305.p1, internal, 93181, 93256
-recovered pasa_asmbl_41305.p1, internal, 93360, 93500
-recovered pasa_asmbl_41305.p1, internal, 93628, 93717
-recovered pasa_asmbl_41305.p1, internal, 93811, 93874
-recovered pasa_asmbl_41305.p1, internal, 93985, 94144
Valid prediction for snap_scaffold_4-snap.1142-T1
Valid prediction for GeneMark_model.15618_t
Valid prediction for GeneMark_model.15640_t
Valid prediction for GeneMark_model.15644_t
Valid prediction for pasa_asmbl_41325.p1
Valid prediction for snap_scaffold_4-snap.1166-T1
Valid prediction for CodingQuarry_transcript_48877-T1
Valid prediction for snap_scaffold_4-snap.1151-T1
Valid prediction for GeneMark_model.15616_t
Valid prediction for GeneMark_model.15643_t
Valid prediction for snap_scaffold_4-snap.1158-T1
Valid prediction for snap_scaffold_4-snap.1135-T1
Couldn't classify 69310, 69320
Sorry, prediction pasa_asmbl_41315.p1 fails validation.
(CCT)	 CT	69310-69320	GT	TGG
(GAC)	 AG	69637-69692	GT	TGG
(CTG)	 AG	69835-69959	GT	AGG
(GTG)	 AG	70331-70507	GT	AGG
(AGC)	 AG	70637-70729	GT	AGG
(GCC)	 AG	70838-70990	GT	AGG
(GCA)	 AG	71206-71283	GT	ATG
(TCC)	 AG	71401-71451	GT	AGG
(GGC)	 AG	71652-71736	GT	GGG
(GTT)	 AG	73138-73289	GT	AGG
(GAC)	 AG	74426-75857	GT	GGG
(GGA)	 AG	75979-76112	GA	AGG
-recovered pasa_asmbl_41315.p1, terminal, 75979, 76112
-recovered pasa_asmbl_41315.p1, internal, 69637, 69692
-recovered pasa_asmbl_41315.p1, internal, 69835, 69959
-recovered pasa_asmbl_41315.p1, internal, 70331, 70507
-recovered pasa_asmbl_41315.p1, internal, 70637, 70729
-recovered pasa_asmbl_41315.p1, internal, 70838, 70990
-recovered pasa_asmbl_41315.p1, internal, 71206, 71283
-recovered pasa_asmbl_41315.p1, internal, 71401, 71451
-recovered pasa_asmbl_41315.p1, internal, 71652, 71736
-recovered pasa_asmbl_41315.p1, internal, 73138, 73289
-recovered pasa_asmbl_41315.p1, internal, 74426, 75857
Valid prediction for GlimmerHMM_glimmerT_9561-T1
Couldn't classify 35271, 36191
Sorry, prediction pasa_asmbl_41324.p1 fails validation.
(AGG)	 TG	35271-36191	AC	AGA
Valid prediction for GeneMark_model.15625_t
Couldn't classify 49065, 49131
Couldn't classify 63505, 63722
Sorry, prediction pasa_asmbl_41322.p1 fails validation.
(CCA)	 TC	49065-49131	GT	TGG
(GAC)	 AG	50277-50369	GT	AGG
(GTT)	 AG	51420-51600	GT	GGG
(GAG)	 AG	53087-53174	GT	AGG
(GAC)	 AG	54082-54216	GT	GGG
(AAC)	 AG	54357-54469	GT	AAG
(ATC)	 AG	54626-54737	GT	AGG
(GAC)	 AG	57155-57367	GT	AGG
(TCT)	 AG	57638-57748	GT	CGG
(GAG)	 AG	57896-58030	GT	AGG
(GAG)	 AG	59318-59448	GT	AGG
(AAC)	 AG	59740-59826	GT	AGG
(GAT)	 AG	62681-62856	GT	TGG
(ACC)	 AG	63505-63722	AG	AGA
-recovered pasa_asmbl_41322.p1, internal, 50277, 50369
-recovered pasa_asmbl_41322.p1, internal, 51420, 51600
-recovered pasa_asmbl_41322.p1, internal, 53087, 53174
-recovered pasa_asmbl_41322.p1, internal, 54082, 54216
-recovered pasa_asmbl_41322.p1, internal, 54357, 54469
-recovered pasa_asmbl_41322.p1, internal, 54626, 54737
-recovered pasa_asmbl_41322.p1, internal, 57155, 57367
-recovered pasa_asmbl_41322.p1, internal, 57638, 57748
-recovered pasa_asmbl_41322.p1, internal, 57896, 58030
-recovered pasa_asmbl_41322.p1, internal, 59318, 59448
-recovered pasa_asmbl_41322.p1, internal, 59740, 59826
-recovered pasa_asmbl_41322.p1, internal, 62681, 62856

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 195143, rend_intergenic: 182303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 258652
-exon list size: 673


building trellis

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27.0    
27.1    
27.3    
27.4    
27.6    
27.7    
27.9    
28.0    
28.1    
28.3    
28.4    
28.6    
28.7    
28.9    
29.0    
29.2    
29.3    
29.5    
29.6    
29.8    
29.9    
30.1    
30.2    
30.4    
30.5    
30.7    
30.8    
31.0    
31.1    
31.3    
31.4    
31.6    
31.7    
31.9    
32.0    
32.1    
32.3    
32.4    
32.6    
32.7    
32.9    
33.0    
33.2    
33.3    
33.5    
33.6    
33.8    
33.9    
34.1    
34.2    
34.4    
34.5    
34.7    
34.8    
35.0    
35.1    
35.3    
35.4    
35.6    
35.7    
35.9    
36.0    
36.1    
36.3    
36.4    
36.6    
36.7    
36.9    
37.0    
37.2    
37.3    
37.5    
37.6    
37.8    
37.9    
38.1    
38.2    
38.4    
38.5    
38.7    
38.8    
39.0    
39.1    
39.3    
39.4    
39.6    
39.7    
39.9    
40.0    
40.1    
40.3    
40.4    
40.6    
40.7    
40.9    
41.0    
41.2    
41.3    
41.5    
41.6    
41.8    
41.9    
42.1    
42.2    
42.4    
42.5    
42.7    
42.8    
43.0    
43.1    
43.3    
43.4    
43.6    
43.7    
43.9    
44.0    
44.1    
44.3    
44.4    
44.6    
44.7    
44.9    
45.0    
45.2    
45.3    
45.5    
45.6    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.7    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.7    
47.9    
48.0    
48.1    
48.3    
48.4    
48.6    
48.7    
48.9    
49.0    
49.2    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.8    
51.0    
51.1    
51.3    
51.4    
51.6    
51.7    
51.9    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.4    
54.5    
54.7    
54.8    
55.0    
55.1    
55.3    
55.4    
55.6    
55.7    
55.9    
56.0    
56.1    
56.3    
56.4    
56.6    
56.7    
56.9    
57.0    
57.2    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
59.0    
59.1    
59.3    
59.4    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.4    
62.5    
62.7    
62.8    
63.0    
63.1    
63.3    
63.4    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.4    
66.5    
66.7    
66.8    
67.0    
67.1    
67.3    
67.4    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.6    
68.7    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.6    
72.7    
72.9    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.1    
74.2    
74.4    
74.5    
74.7    
74.8    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.6    
76.7    
76.9    
77.0    
77.2    
77.3    
77.5    
77.6    
77.8    
77.9    
78.1    
78.2    
78.4    
78.5    
78.7    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.8    
81.9    
82.1    
82.2    
82.4    
82.5    
82.7    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.6    
84.7    
84.9    
85.0    
85.2    
85.3    
85.5    
85.6    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.7    
86.8    
87.0    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.3    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.4    
90.5    
90.7    
90.8    
91.0    
91.1    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.6    
96.7    
96.9    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 195143, rend_intergenic: 182303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support