-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_3231443-3420080

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.15211_t
Valid prediction for GlimmerHMM_glimmerT_9215-T1
Valid prediction for snap_scaffold_4-snap.724-T1
Valid prediction for GlimmerHMM_glimmerT_9206-T1
Valid prediction for snap_scaffold_4-snap.732-T1
Valid prediction for GeneMark_model.15243_t
Valid prediction for snap_scaffold_4-snap.731-T1
Valid prediction for pasa_asmbl_42493.p1
Valid prediction for GlimmerHMM_glimmerT_9216-T1
Valid prediction for pasa_asmbl_42500.p1
Valid prediction for GlimmerHMM_glimmerT_9236-T1
Valid prediction for GlimmerHMM_glimmerT_9219-T1
Valid prediction for GlimmerHMM_glimmerT_9227-T1
Valid prediction for Augustus_model.g5974.t1
Valid prediction for GlimmerHMM_glimmerT_9231-T1
Valid prediction for snap_scaffold_4-snap.757-T1
Valid prediction for HiQ_model.g5984.t1
Valid prediction for GlimmerHMM_glimmerT_9212-T1
Couldn't classify 153874, 153930
Couldn't classify 154336, 154490
Sorry, prediction pasa_asmbl_42514.p1 fails validation.
(ATG)	 TT	148309-148377	GT	CGG
(GAT)	 AG	149056-149118	GT	AGG
(GAA)	 AG	149446-149551	GT	GGG
(ATG)	 AG	149643-149733	GT	AGG
(TCA)	 AG	149998-150510	GT	AGG
(GAG)	 AG	150614-150736	GT	AGG
(GAA)	 AG	151029-151136	GT	AGG
(GAA)	 AG	151533-151631	GT	AGG
(AAA)	 AG	151868-151969	GT	AGG
(AAA)	 AG	152124-152189	GT	AGG
(GAA)	 AG	152332-152391	GT	AGG
(GAA)	 AG	152643-152714	GT	AGG
(GAA)	 AG	152813-152881	GT	AGG
(GAG)	 AG	153029-153091	GT	AGG
(AAA)	 AG	153222-153296	GT	CGG
(GAG)	 AG	153449-153609	GT	TGG
(ATA)	 AG	153874-153930	AT	CCA
(ATA)	 AC	154336-154490	GT	AGG
(GAG)	 AG	156479-156625	GT	AGG
(GTC)	 AG	156747-156818	GT	AGG
(TTC)	 AG	157177-157185	TG	GAT
-recovered pasa_asmbl_42514.p1, initial, 148309, 148377
add_exon() Sorry, pasa_asmbl_42514.p1 149643-149733-initial-1 is invalid.
-recovered pasa_asmbl_42514.p1, initial, 149643, 149733
-recovered pasa_asmbl_42514.p1, terminal, 157177, 157185
-recovered pasa_asmbl_42514.p1, internal, 149056, 149118
-recovered pasa_asmbl_42514.p1, internal, 149446, 149551
-recovered pasa_asmbl_42514.p1, internal, 149643, 149733
-recovered pasa_asmbl_42514.p1, internal, 149998, 150510
-recovered pasa_asmbl_42514.p1, internal, 150614, 150736
-recovered pasa_asmbl_42514.p1, internal, 151029, 151136
-recovered pasa_asmbl_42514.p1, internal, 151533, 151631
-recovered pasa_asmbl_42514.p1, internal, 151868, 151969
-recovered pasa_asmbl_42514.p1, internal, 152124, 152189
-recovered pasa_asmbl_42514.p1, internal, 152332, 152391
-recovered pasa_asmbl_42514.p1, internal, 152643, 152714
-recovered pasa_asmbl_42514.p1, internal, 152813, 152881
-recovered pasa_asmbl_42514.p1, internal, 153029, 153091
-recovered pasa_asmbl_42514.p1, internal, 153222, 153296
-recovered pasa_asmbl_42514.p1, internal, 153449, 153609
-recovered pasa_asmbl_42514.p1, internal, 156479, 156625
-recovered pasa_asmbl_42514.p1, internal, 156747, 156818
Valid prediction for Augustus_model.g5977.t1
Valid prediction for GeneMark_model.15242_t
Valid prediction for GlimmerHMM_glimmerT_9224-T1
Valid prediction for snap_scaffold_4-snap.761-T1
Valid prediction for HiQ_model.g5985.t1
Valid prediction for GlimmerHMM_glimmerT_9228-T1
Valid prediction for snap_scaffold_4-snap.759-T1
Valid prediction for GlimmerHMM_glimmerT_9221-T1
Valid prediction for GeneMark_model.15244_t
Valid prediction for GlimmerHMM_glimmerT_9222-T1
Couldn't classify 43889, 44029
Sorry, prediction pasa_asmbl_42492.p1 fails validation.
(GAC)	 TG	43889-44029	GT	AGG
(ACG)	 AG	44542-44739	AG	AGA
-recovered pasa_asmbl_42492.p1, terminal, 44542, 44739
Valid prediction for GlimmerHMM_glimmerT_9233-T1
Valid prediction for CodingQuarry_transcript_48805-T1
Valid prediction for GeneMark_model.15218_t
Valid prediction for Augustus_model.g5988.t1
Valid prediction for snap_scaffold_4-snap.738-T1
Valid prediction for snap_scaffold_4-snap.748-T1
Valid prediction for CodingQuarry_transcript_48814-T1
Valid prediction for GeneMark_model.15246_t
Valid prediction for GlimmerHMM_glimmerT_9229-T1
Valid prediction for GeneMark_model.15240_t
Couldn't classify 86581, 86687
Couldn't classify 87731, 88276
Sorry, prediction pasa_asmbl_42502.p1 fails validation.
(AGC)	 CC	86581-86687	GT	AGG
(GCC)	 AG	86965-87087	GT	CGG
(GCA)	 AG	87466-87571	GT	AGG
(AAC)	 AG	87731-88276	AA	CCA
-recovered pasa_asmbl_42502.p1, internal, 86965, 87087
-recovered pasa_asmbl_42502.p1, internal, 87466, 87571
Valid prediction for HiQ_model.g5989.t1
Valid prediction for snap_scaffold_4-snap.734-T1
Valid prediction for snap_scaffold_4-snap.725-T1
Valid prediction for GlimmerHMM_glimmerT_9223-T1
Valid prediction for Augustus_model.g5976.t1
Valid prediction for Augustus_model.g5981.t1
Valid prediction for GlimmerHMM_glimmerT_9213-T1
Valid prediction for HiQ_model.g5975.t1
Valid prediction for GeneMark_model.15217_t
Valid prediction for GeneMark_model.15236_t
Valid prediction for GeneMark_model.15231_t
Valid prediction for Augustus_model.g5982.t1
Valid prediction for CodingQuarry_transcript_48809-T1
Valid prediction for HiQ_model.g5980.t1
Valid prediction for GlimmerHMM_glimmerT_9232-T1
Valid prediction for snap_scaffold_4-snap.760-T1
Valid prediction for GeneMark_model.15229_t
Valid prediction for GlimmerHMM_glimmerT_9225-T1
Valid prediction for snap_scaffold_4-snap.726-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_48810-T1
Valid prediction for snap_scaffold_4-snap.756-T1
Valid prediction for GeneMark_model.15227_t
Valid prediction for snap_scaffold_4-snap.739-T1
Valid prediction for HiQ_model.g5979.t1
Valid prediction for Augustus_model.g5986.t1
Valid prediction for snap_scaffold_4-snap.743-T1
Valid prediction for snap_scaffold_4-snap.744-T1
Valid prediction for GeneMark_model.15239_t
Valid prediction for CodingQuarry_transcript_48808-T1
Valid prediction for snap_scaffold_4-snap.742-T1
Valid prediction for snap_scaffold_4-snap.746-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g5992.t1
Valid prediction for pasa_asmbl_42503.p1
Valid prediction for snap_scaffold_4-snap.733-T1
Valid prediction for GlimmerHMM_glimmerT_9237-T1
Couldn't classify 106985, 107036
Couldn't classify 107651, 107753
Sorry, prediction pasa_asmbl_42507.p1 fails validation.
(ATG)	 TC	105283-105518	GT	GAG
(CTG)	 AG	105796-105956	GT	AGG
(ACA)	 AG	106222-106371	GT	CGG
(AGC)	 AG	106675-106812	GT	ACG
(GTT)	 AG	106985-107036	AT	AGA
(CAT)	 AC	107651-107753	GT	ATG
(ATC)	 AG	107906-108018	GT	AGG
(CCT)	 AG	108923-109043	TG	AGT
-recovered pasa_asmbl_42507.p1, initial, 105283, 105518
add_exon() Sorry, pasa_asmbl_42507.p1 105796-105956-terminal-2 is invalid.
-recovered pasa_asmbl_42507.p1, terminal, 105796, 105956
-recovered pasa_asmbl_42507.p1, terminal, 108923, 109043
-recovered pasa_asmbl_42507.p1, internal, 105796, 105956
-recovered pasa_asmbl_42507.p1, internal, 106222, 106371
-recovered pasa_asmbl_42507.p1, internal, 106675, 106812
-recovered pasa_asmbl_42507.p1, internal, 107906, 108018
Couldn't classify 153874, 153930
Couldn't classify 154336, 154490
Sorry, prediction CodingQuarry_transcript_48815-T1 fails validation.
(ATG)	 TT	148309-148377	GT	CGG
(GAT)	 AG	149056-149118	GT	AGG
(GAA)	 AG	149446-149551	GT	GGG
(ATG)	 AG	149643-149733	GT	AGG
(TCA)	 AG	149998-150510	GT	AGG
(GAG)	 AG	150614-150736	GT	AGG
(GAA)	 AG	151029-151136	GT	AGG
(GAA)	 AG	151533-151631	GT	AGG
(AAA)	 AG	151868-151969	GT	AGG
(AAA)	 AG	152124-152189	GT	AGG
(GAA)	 AG	152332-152391	GT	AGG
(GAA)	 AG	152643-152714	GT	AGG
(GAA)	 AG	152813-152881	GT	AGG
(GAG)	 AG	153029-153091	GT	AGG
(AAA)	 AG	153222-153296	GT	CGG
(GAG)	 AG	153449-153609	GT	TGG
(ATA)	 AG	153874-153930	AT	CCA
(ATA)	 AC	154336-154490	GT	AGG
(GAG)	 AG	156479-156625	GT	AGG
(GTC)	 AG	156747-156818	GT	AGG
(TTC)	 AG	157177-157185	TG	GAT
-recovered CodingQuarry_transcript_48815-T1, initial, 148309, 148377
add_exon() Sorry, CodingQuarry_transcript_48815-T1 149643-149733-initial-1 is invalid.
-recovered CodingQuarry_transcript_48815-T1, initial, 149643, 149733
-recovered CodingQuarry_transcript_48815-T1, terminal, 157177, 157185
-recovered CodingQuarry_transcript_48815-T1, internal, 149056, 149118
-recovered CodingQuarry_transcript_48815-T1, internal, 149446, 149551
-recovered CodingQuarry_transcript_48815-T1, internal, 149643, 149733
-recovered CodingQuarry_transcript_48815-T1, internal, 149998, 150510
-recovered CodingQuarry_transcript_48815-T1, internal, 150614, 150736
-recovered CodingQuarry_transcript_48815-T1, internal, 151029, 151136
-recovered CodingQuarry_transcript_48815-T1, internal, 151533, 151631
-recovered CodingQuarry_transcript_48815-T1, internal, 151868, 151969
-recovered CodingQuarry_transcript_48815-T1, internal, 152124, 152189
-recovered CodingQuarry_transcript_48815-T1, internal, 152332, 152391
-recovered CodingQuarry_transcript_48815-T1, internal, 152643, 152714
-recovered CodingQuarry_transcript_48815-T1, internal, 152813, 152881
-recovered CodingQuarry_transcript_48815-T1, internal, 153029, 153091
-recovered CodingQuarry_transcript_48815-T1, internal, 153222, 153296
-recovered CodingQuarry_transcript_48815-T1, internal, 153449, 153609
-recovered CodingQuarry_transcript_48815-T1, internal, 156479, 156625
-recovered CodingQuarry_transcript_48815-T1, internal, 156747, 156818
Couldn't classify 106985, 107036
Couldn't classify 107651, 107753
Sorry, prediction CodingQuarry_transcript_48811-T1 fails validation.
(ATG)	 CC	105824-105956	GT	AGG
(ACA)	 AG	106222-106371	GT	CGG
(AGC)	 AG	106675-106812	GT	ACG
(GTT)	 AG	106985-107036	AT	AGA
(CAT)	 AC	107651-107753	GT	ATG
(ATC)	 AG	107906-108018	GT	AGG
(CCT)	 AG	108923-109025	GT	TGG
(GAA)	 AG	109971-110012	AG	AAA
-recovered CodingQuarry_transcript_48811-T1, initial, 105824, 105956
-recovered CodingQuarry_transcript_48811-T1, terminal, 109971, 110012
-recovered CodingQuarry_transcript_48811-T1, internal, 106222, 106371
-recovered CodingQuarry_transcript_48811-T1, internal, 106675, 106812
-recovered CodingQuarry_transcript_48811-T1, internal, 107906, 108018
-recovered CodingQuarry_transcript_48811-T1, internal, 108923, 109025
Valid prediction for snap_scaffold_4-snap.727-T1
Valid prediction for GlimmerHMM_glimmerT_9226-T1
Valid prediction for GeneMark_model.15234_t
Valid prediction for snap_scaffold_4-snap.754-T1
Valid prediction for GeneMark_model.15226_t
Valid prediction for snap_scaffold_4-snap.751-T1
Valid prediction for Augustus_model.g5983.t1
Valid prediction for snap_scaffold_4-snap.752-T1
Valid prediction for snap_scaffold_4-snap.741-T1
Valid prediction for pasa_asmbl_42499.p2
Valid prediction for GeneMark_model.15232_t
Valid prediction for GlimmerHMM_glimmerT_9209-T1
Couldn't classify 42922, 43073
Sorry, prediction pasa_asmbl_42487.p1 fails validation.
(ATG)	 CT	38634-38699	GT	GGG
(GAC)	 AG	38835-38918	GT	AGG
(GGT)	 AG	39100-39146	GT	GAG
(TTT)	 AG	39376-39487	GT	AGG
(TTC)	 AG	39589-39776	GT	AGG
(GCA)	 AG	40288-40470	GT	AGG
(GAA)	 AG	40658-40752	GT	AGG
(GGC)	 AG	40886-41001	GT	AGG
(GTG)	 AG	41154-41229	GC	AGG
(ATA)	 AG	41325-41418	GT	GGG
(CTC)	 AG	41535-41705	GT	TGG
(GGA)	 AG	41883-42118	GT	TGG
(AGG)	 AG	42922-43073	AA	CCA
-recovered pasa_asmbl_42487.p1, initial, 38634, 38699
-recovered pasa_asmbl_42487.p1, internal, 38835, 38918
-recovered pasa_asmbl_42487.p1, internal, 39100, 39146
-recovered pasa_asmbl_42487.p1, internal, 39376, 39487
-recovered pasa_asmbl_42487.p1, internal, 39589, 39776
-recovered pasa_asmbl_42487.p1, internal, 40288, 40470
-recovered pasa_asmbl_42487.p1, internal, 40658, 40752
-recovered pasa_asmbl_42487.p1, internal, 40886, 41001
-recovered pasa_asmbl_42487.p1, internal, 41154, 41229
-recovered pasa_asmbl_42487.p1, internal, 41325, 41418
-recovered pasa_asmbl_42487.p1, internal, 41535, 41705
-recovered pasa_asmbl_42487.p1, internal, 41883, 42118
Valid prediction for snap_scaffold_4-snap.763-T1
Valid prediction for Augustus_model.g5971.t1
Valid prediction for snap_scaffold_4-snap.755-T1
Valid prediction for HiQ_model.g5993.t1
Valid prediction for GlimmerHMM_glimmerT_9235-T1
Valid prediction for GeneMark_model.15213_t
Couldn't classify 106985, 107036
Couldn't classify 107651, 107753
Sorry, prediction CodingQuarry_transcript_48812-T1 fails validation.
(ATG)	 CC	105824-105956	GT	AGG
(ACA)	 AG	106222-106371	GT	CGG
(AGC)	 AG	106675-106812	GT	ACG
(GTT)	 AG	106985-107036	AT	AGA
(CAT)	 AC	107651-107753	GT	ATG
(ATC)	 AG	107906-108018	GT	AGG
(CCT)	 AG	108923-109025	GT	TGG
(TGT)	 AG	111221-111571	GC	GAG
-recovered CodingQuarry_transcript_48812-T1, initial, 105824, 105956
-recovered CodingQuarry_transcript_48812-T1, terminal, 111221, 111571
-recovered CodingQuarry_transcript_48812-T1, internal, 106222, 106371
-recovered CodingQuarry_transcript_48812-T1, internal, 106675, 106812
-recovered CodingQuarry_transcript_48812-T1, internal, 107906, 108018
-recovered CodingQuarry_transcript_48812-T1, internal, 108923, 109025
-recovered CodingQuarry_transcript_48812-T1, internal, 111221, 111571
Valid prediction for snap_scaffold_4-snap.728-T1
Valid prediction for GeneMark_model.15237_t
Couldn't classify 103628, 104071
Couldn't classify 104228, 104287
Sorry, prediction pasa_asmbl_42504.p1 fails validation.
(GCC)	 GG	103628-104071	GT	AGG
(CGT)	 AG	104228-104287	AC	AGA
Valid prediction for GlimmerHMM_glimmerT_9207-T1
Valid prediction for snap_scaffold_4-snap.721-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.737-T1
Valid prediction for GeneMark_model.15220_t
Valid prediction for Augustus_model.g5990.t1
Valid prediction for GlimmerHMM_glimmerT_9220-T1
Valid prediction for GeneMark_model.15225_t
Valid prediction for GlimmerHMM_glimmerT_9230-T1
Valid prediction for snap_scaffold_4-snap.750-T1
Valid prediction for snap_scaffold_4-snap.747-T1
Valid prediction for GeneMark_model.15245_t
Valid prediction for snap_scaffold_4-snap.745-T1
Valid prediction for GlimmerHMM_glimmerT_9218-T1
Valid prediction for GeneMark_model.15214_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.736-T1
Valid prediction for pasa_asmbl_41164.p1
Valid prediction for CodingQuarry_transcript_48804-T1
Valid prediction for GlimmerHMM_glimmerT_9234-T1
Couldn't classify 161119, 161289
Couldn't classify 161370, 161528
Sorry, prediction CodingQuarry_transcript_48803-T1 fails validation.
(ATG)	 GT	161119-161289	AT	CCA
(ATG)	 TC	161370-161528	CG	GAC
Valid prediction for GlimmerHMM_glimmerT_9204-T1
Valid prediction for CodingQuarry_transcript_48802-T1
Valid prediction for GeneMark_model.15228_t
Valid prediction for snap_scaffold_4-snap.720-T1
Valid prediction for HiQ_model.g5972.t1
Valid prediction for GlimmerHMM_glimmerT_9202-T1
Valid prediction for GeneMark_model.15215_t
Valid prediction for snap_scaffold_4-snap.765-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g5987.t1
Valid prediction for snap_scaffold_4-snap.723-T1
Valid prediction for GlimmerHMM_glimmerT_9217-T1
Valid prediction for Augustus_model.g5969.t1
Valid prediction for GeneMark_model.15238_t
Valid prediction for GlimmerHMM_glimmerT_9211-T1
Valid prediction for GeneMark_model.15230_t
Valid prediction for CodingQuarry_transcript_48800-T1
Valid prediction for snap_scaffold_4-snap.762-T1
Valid prediction for GeneMark_model.15219_t
Valid prediction for GlimmerHMM_glimmerT_9208-T1
Valid prediction for snap_scaffold_4-snap.718-T1
Valid prediction for GeneMark_model.15235_t
Valid prediction for GlimmerHMM_glimmerT_9205-T1
Valid prediction for snap_scaffold_4-snap.729-T1
Valid prediction for GlimmerHMM_glimmerT_9210-T1
Valid prediction for snap_scaffold_4-snap.722-T1
Valid prediction for GlimmerHMM_glimmerT_9214-T1
Valid prediction for GeneMark_model.15210_t
Valid prediction for GeneMark_model.15212_t
Valid prediction for HiQ_model.g5968.t1
Valid prediction for CodingQuarry_transcript_48801-T1
Valid prediction for GeneMark_model.15208_t
Valid prediction for GeneMark_model.15216_t
Valid prediction for Augustus_model.g5978.t1
Valid prediction for GeneMark_model.15224_t
Valid prediction for snap_scaffold_4-snap.730-T1
Valid prediction for GeneMark_model.15223_t
Valid prediction for snap_scaffold_4-snap.740-T1
Valid prediction for snap_scaffold_4-snap.764-T1
Valid prediction for GlimmerHMM_glimmerT_9238-T1
Valid prediction for GeneMark_model.15241_t
Valid prediction for pasa_asmbl_41171.p1
Valid prediction for snap_scaffold_4-snap.749-T1
Valid prediction for snap_scaffold_4-snap.735-T1
Valid prediction for GeneMark_model.15221_t
Couldn't classify 159890, 160041
Sorry, prediction pasa_asmbl_41176.p1 fails validation.
(ATG)	 AA	152248-152290	GT	AGG
(TTG)	 AG	152368-152499	GT	AGG
(ATT)	 AG	155081-155904	GT	AGG
(TTA)	 AG	155997-156127	GT	AGG
(ACA)	 AG	156337-156454	GT	AGG
(GAG)	 AG	156860-157045	GT	GGG
(ATC)	 AG	157473-157625	GT	AGG
(CTG)	 AG	157877-158031	GT	AGG
(CCT)	 AG	158222-158339	GT	AGG
(GTG)	 AG	158431-158481	GT	GGG
(ACG)	 AG	158933-159040	GT	AGG
(ATG)	 AG	159349-159586	GT	CTG
(CGC)	 AG	159890-160041	AC	TTA
-recovered pasa_asmbl_41176.p1, initial, 152248, 152290
-recovered pasa_asmbl_41176.p1, initial, 159349, 159586
-recovered pasa_asmbl_41176.p1, terminal, 157877, 158031
-recovered pasa_asmbl_41176.p1, internal, 152368, 152499
-recovered pasa_asmbl_41176.p1, internal, 155081, 155904
-recovered pasa_asmbl_41176.p1, internal, 155997, 156127
-recovered pasa_asmbl_41176.p1, internal, 156337, 156454
-recovered pasa_asmbl_41176.p1, internal, 156860, 157045
-recovered pasa_asmbl_41176.p1, internal, 157473, 157625
-recovered pasa_asmbl_41176.p1, internal, 157877, 158031
-recovered pasa_asmbl_41176.p1, internal, 158222, 158339
-recovered pasa_asmbl_41176.p1, internal, 158431, 158481
-recovered pasa_asmbl_41176.p1, internal, 158933, 159040
-recovered pasa_asmbl_41176.p1, internal, 159349, 159586
Valid prediction for HiQ_model.g5973.t1
Valid prediction for GeneMark_model.15209_t
Valid prediction for GlimmerHMM_glimmerT_9203-T1
Valid prediction for snap_scaffold_4-snap.753-T1
Valid prediction for GeneMark_model.15233_t
Valid prediction for Augustus_model.g5991.t1
Valid prediction for snap_scaffold_4-snap.719-T1
Valid prediction for HiQ_model.g5970.t1
Valid prediction for snap_scaffold_4-snap.758-T1
Couldn't classify 171671, 171743
Sorry, prediction pasa_asmbl_41169.p1 fails validation.
(GGG)	 GT	171671-171743	GT	AAG
(GTT)	 AG	172528-172671	GT	CAG
(CTG)	 AG	172921-172990	GT	CTG
(GCA)	 AG	173113-173212	GT	AGG
(AGG)	 AG	173723-173860	GT	TGG
(GGC)	 AG	174013-174056	GT	AAG
(AGA)	 AG	174341-174446	GT	AGG
(TCC)	 AG	174545-174617	GT	AGG
(ACA)	 AG	175405-175487	GT	AGG
(AGG)	 AG	176055-176147	AG	GAA
add_exon() Sorry, pasa_asmbl_41169.p1 174545-174617-terminal-3 is invalid.
-recovered pasa_asmbl_41169.p1, terminal, 174545, 174617
-recovered pasa_asmbl_41169.p1, terminal, 176055, 176147
-recovered pasa_asmbl_41169.p1, internal, 172528, 172671
-recovered pasa_asmbl_41169.p1, internal, 172921, 172990
-recovered pasa_asmbl_41169.p1, internal, 173113, 173212
-recovered pasa_asmbl_41169.p1, internal, 173723, 173860
-recovered pasa_asmbl_41169.p1, internal, 174013, 174056
-recovered pasa_asmbl_41169.p1, internal, 174341, 174446
-recovered pasa_asmbl_41169.p1, internal, 174545, 174617
-recovered pasa_asmbl_41169.p1, internal, 175405, 175487

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15722, rend_intergenic: 12492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33814, rend_intergenic: 28589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91186, rend_intergenic: 82444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140938, rend_intergenic: 137297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146936, rend_intergenic: 142795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179905, rend_intergenic: 179491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 188638
-exon list size: 657


building trellis

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-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 15722, rend_intergenic: 12492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33814, rend_intergenic: 28589  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91186, rend_intergenic: 82444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140938, rend_intergenic: 137297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146936, rend_intergenic: 142795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179905, rend_intergenic: 179491  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support