-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_2610763-2904023

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_9128-T1
Valid prediction for GeneMark_model.15060_t
Valid prediction for CodingQuarry_transcript_48798-T1
Valid prediction for snap_scaffold_4-snap.586-T1
Valid prediction for GeneMark_model.15091_t
Valid prediction for Augustus_model.g5934.t1
Valid prediction for GeneMark_model.15022_t
Valid prediction for Augustus_model.g5937.t1
Couldn't classify 35175, 35329
Sorry, prediction pasa_asmbl_42482.p1 fails validation.
(ATG)	 GC	33559-33681	GT	AGG
(GAG)	 AG	33844-33956	GT	AGG
(GGA)	 AG	34154-34259	GT	AGG
(AGG)	 AG	34361-34487	GT	AGG
(GCA)	 AG	35175-35329	CA	AGC
-recovered pasa_asmbl_42482.p1, initial, 33559, 33681
-recovered pasa_asmbl_42482.p1, internal, 33844, 33956
-recovered pasa_asmbl_42482.p1, internal, 34154, 34259
-recovered pasa_asmbl_42482.p1, internal, 34361, 34487
Valid prediction for GeneMark_model.15089_t
Valid prediction for snap_scaffold_4-snap.631-T1
Valid prediction for snap_scaffold_4-snap.593-T1
Valid prediction for GeneMark_model.15074_t
Valid prediction for GeneMark_model.15099_t
Valid prediction for snap_scaffold_4-snap.628-T1
Valid prediction for GeneMark_model.15087_t
Valid prediction for snap_scaffold_4-snap.614-T1
Valid prediction for GeneMark_model.15038_t
Valid prediction for GeneMark_model.15101_t
Valid prediction for GlimmerHMM_glimmerT_9131-T1
Valid prediction for GeneMark_model.15069_t
Valid prediction for GeneMark_model.15072_t
Valid prediction for snap_scaffold_4-snap.590-T1
Valid prediction for GeneMark_model.15020_t
Valid prediction for Augustus_model.g5918.t1
Valid prediction for GeneMark_model.15024_t
Couldn't classify 25833, 25945
Couldn't classify 29239, 29258
Sorry, prediction pasa_asmbl_43536.p2 fails validation.
(GAG)	 AG	25833-25945	GT	AGG
(AAA)	 AG	26354-26427	GT	AGG
(CCT)	 AG	26779-26840	GT	AGG
(AAG)	 AG	27608-27638	GT	AGG
(TCT)	 AG	29239-29258	GA	TGG
-recovered pasa_asmbl_43536.p2, internal, 25833, 25945
-recovered pasa_asmbl_43536.p2, internal, 26354, 26427
-recovered pasa_asmbl_43536.p2, internal, 26779, 26840
-recovered pasa_asmbl_43536.p2, internal, 27608, 27638
Valid prediction for Augustus_model.g5936.t1
Valid prediction for GeneMark_model.15064_t
Valid prediction for GeneMark_model.15086_t
Valid prediction for snap_scaffold_4-snap.619-T1
Valid prediction for GeneMark_model.15057_t
Valid prediction for GeneMark_model.15059_t
Valid prediction for GeneMark_model.15027_t
Valid prediction for GlimmerHMM_glimmerT_9124-T1
Valid prediction for snap_scaffold_4-snap.604-T1
Valid prediction for GlimmerHMM_glimmerT_9121-T1
Valid prediction for snap_scaffold_4-snap.624-T1
Valid prediction for GeneMark_model.15047_t
Valid prediction for snap_scaffold_4-snap.582-T1
Valid prediction for snap_scaffold_4-snap.581-T1
Valid prediction for GlimmerHMM_glimmerT_9137-T1
Valid prediction for GlimmerHMM_glimmerT_9138-T1
Valid prediction for GeneMark_model.15093_t
Valid prediction for GeneMark_model.15036_t
Valid prediction for GlimmerHMM_glimmerT_9116-T1
Valid prediction for snap_scaffold_4-snap.633-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 37019, 37237
Couldn't classify 38454, 38888
Sorry, prediction pasa_asmbl_42483.p1 fails validation.
(GAG)	 CG	37019-37237	GT	AGG
(CTC)	 AG	38454-38888	AG	AGA
Valid prediction for GeneMark_model.15035_t
Valid prediction for GeneMark_model.15076_t
Valid prediction for GeneMark_model.15033_t
Valid prediction for GlimmerHMM_glimmerT_9117-T1
Valid prediction for GeneMark_model.15053_t
Valid prediction for GeneMark_model.15083_t
Valid prediction for GeneMark_model.15081_t
Valid prediction for GlimmerHMM_glimmerT_9115-T1
Valid prediction for snap_scaffold_4-snap.611-T1
Valid prediction for GeneMark_model.15030_t
Valid prediction for GeneMark_model.15042_t
Valid prediction for GeneMark_model.15055_t
Valid prediction for snap_scaffold_4-snap.608-T1
Valid prediction for GeneMark_model.15017_t
Valid prediction for Augustus_model.g5926.t1
Valid prediction for snap_scaffold_4-snap.600-T1
Valid prediction for GeneMark_model.15095_t
Valid prediction for GlimmerHMM_glimmerT_9143-T1
Valid prediction for snap_scaffold_4-snap.609-T1
Valid prediction for snap_scaffold_4-snap.610-T1
Valid prediction for GeneMark_model.15066_t
Valid prediction for GeneMark_model.15041_t
Valid prediction for GeneMark_model.15051_t
Valid prediction for GeneMark_model.15016_t
Valid prediction for GlimmerHMM_glimmerT_9133-T1
Valid prediction for snap_scaffold_4-snap.617-T1
Valid prediction for GeneMark_model.15097_t
Valid prediction for GeneMark_model.15015_t
Valid prediction for snap_scaffold_4-snap.606-T1
Valid prediction for Augustus_model.g5919.t1
Valid prediction for GlimmerHMM_glimmerT_9136-T1
Valid prediction for snap_scaffold_4-snap.585-T1
Valid prediction for snap_scaffold_4-snap.627-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_9118-T1
Valid prediction for GlimmerHMM_glimmerT_9114-T1
Valid prediction for snap_scaffold_4-snap.596-T1
Valid prediction for GeneMark_model.15078_t
Valid prediction for snap_scaffold_4-snap.620-T1
Valid prediction for snap_scaffold_4-snap.597-T1
Valid prediction for Augustus_model.g5920.t1
Valid prediction for snap_scaffold_4-snap.621-T1
Valid prediction for Augustus_model.g5923.t1
Valid prediction for snap_scaffold_4-snap.595-T1
Valid prediction for GeneMark_model.15049_t
Valid prediction for GeneMark_model.15045_t
Valid prediction for Augustus_model.g5917.t1
Valid prediction for snap_scaffold_4-snap.598-T1
Valid prediction for GlimmerHMM_glimmerT_9139-T1
Valid prediction for GlimmerHMM_glimmerT_9125-T1
Valid prediction for snap_scaffold_4-snap.580-T1
Valid prediction for snap_scaffold_4-snap.607-T1
Valid prediction for snap_scaffold_4-snap.623-T1
Valid prediction for GlimmerHMM_glimmerT_9127-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.15088_t
Valid prediction for CodingQuarry_transcript_48799-T1
Valid prediction for GeneMark_model.15023_t
Valid prediction for GeneMark_model.15043_t
Valid prediction for Augustus_model.g5927.t1
Valid prediction for snap_scaffold_4-snap.589-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g5932.t1
Couldn't classify 122957, 123148
Couldn't classify 123543, 123665
Sorry, prediction pasa_asmbl_41147.p1 fails validation.
(CTG)	 CC	122957-123148	GT	AGG
(GTG)	 AG	123543-123665	TG	TGT
Valid prediction for GeneMark_model.15019_t
Valid prediction for GeneMark_model.15077_t
Valid prediction for GeneMark_model.15068_t
Valid prediction for GeneMark_model.15037_t
Valid prediction for snap_scaffold_4-snap.613-T1
Valid prediction for GeneMark_model.15031_t
Valid prediction for GeneMark_model.15014_t
Valid prediction for GlimmerHMM_glimmerT_9135-T1
Valid prediction for snap_scaffold_4-snap.587-T1
Valid prediction for GeneMark_model.15029_t
Valid prediction for GlimmerHMM_glimmerT_9147-T1
Valid prediction for snap_scaffold_4-snap.612-T1
Couldn't classify 80148, 80330
Couldn't classify 81275, 81400
Sorry, prediction pasa_asmbl_42287.p2 fails validation.
(GTG)	 GT	80148-80330	GT	AGG
(ATG)	 AG	81275-81400	GT	AGG
-recovered pasa_asmbl_42287.p2, initial, 81275, 81400
-recovered pasa_asmbl_42287.p2, internal, 81275, 81400
Valid prediction for GeneMark_model.15061_t
Valid prediction for GeneMark_model.15025_t
Valid prediction for GlimmerHMM_glimmerT_9119-T1
Valid prediction for Augustus_model.g5924.t1
Valid prediction for Augustus_model.g5929.t1
Valid prediction for GeneMark_model.15075_t
Valid prediction for HiQ_model.g5922.t1
Valid prediction for GlimmerHMM_glimmerT_9144-T1
Valid prediction for snap_scaffold_4-snap.632-T1
Valid prediction for Augustus_model.g5928.t1
Valid prediction for GeneMark_model.15084_t
Valid prediction for GlimmerHMM_glimmerT_9132-T1
Valid prediction for snap_scaffold_4-snap.579-T1
Valid prediction for snap_scaffold_4-snap.630-T1
Valid prediction for GeneMark_model.15079_t
Couldn't classify 136499, 136702
Couldn't classify 145078, 145201
Sorry, prediction pasa_asmbl_41145.p1 fails validation.
(CCG)	 AG	136499-136702	GT	AGG
(GTG)	 AG	137597-137682	GT	AAG
(GGT)	 AG	138375-138541	GT	TGG
(GGG)	 AG	138841-138986	GT	AGG
(GTG)	 AG	140064-140184	GT	GGG
(CCA)	 AG	140295-140437	GT	AGG
(AGC)	 AG	143203-143340	GT	AGG
(GTG)	 AG	143729-143849	GT	AGG
(ATG)	 AG	143937-144069	GT	AGG
(TCT)	 AG	145078-145201	AG	CCA
add_exon() Sorry, pasa_asmbl_41145.p1 143937-144069-initial-1 is invalid.
-recovered pasa_asmbl_41145.p1, initial, 143937, 144069
-recovered pasa_asmbl_41145.p1, internal, 136499, 136702
-recovered pasa_asmbl_41145.p1, internal, 137597, 137682
-recovered pasa_asmbl_41145.p1, internal, 138375, 138541
-recovered pasa_asmbl_41145.p1, internal, 138841, 138986
-recovered pasa_asmbl_41145.p1, internal, 140064, 140184
-recovered pasa_asmbl_41145.p1, internal, 140295, 140437
-recovered pasa_asmbl_41145.p1, internal, 143203, 143340
-recovered pasa_asmbl_41145.p1, internal, 143729, 143849
-recovered pasa_asmbl_41145.p1, internal, 143937, 144069
Valid prediction for snap_scaffold_4-snap.618-T1
Valid prediction for GeneMark_model.15082_t
Valid prediction for GlimmerHMM_glimmerT_9134-T1
Couldn't classify 236963, 237114
Sorry, prediction pasa_asmbl_41140.p3 fails validation.
(GGC)	 TA	236963-237114	GT	AGG
(GGA)	 AG	238061-238147	GT	AGG
(GTT)	 AG	238422-238583	GT	AGG
(GTT)	 AG	238853-238907	CA	GAC
-recovered pasa_asmbl_41140.p3, terminal, 238853, 238907
-recovered pasa_asmbl_41140.p3, internal, 238061, 238147
-recovered pasa_asmbl_41140.p3, internal, 238422, 238583
Valid prediction for GlimmerHMM_glimmerT_9141-T1
Valid prediction for GeneMark_model.15056_t
Valid prediction for GeneMark_model.15085_t
Valid prediction for GeneMark_model.15058_t
Valid prediction for GeneMark_model.15048_t
Valid prediction for snap_scaffold_4-snap.605-T1
Valid prediction for GeneMark_model.15052_t
Valid prediction for snap_scaffold_4-snap.629-T1
Couldn't classify 91614, 91814
Couldn't classify 92977, 93090
Sorry, prediction pasa_asmbl_42334.p2 fails validation.
(ATC)	 AG	91614-91814	GT	AGG
(ATA)	 AG	92977-93090	AC	TGA
-recovered pasa_asmbl_42334.p2, internal, 91614, 91814
Valid prediction for GeneMark_model.15098_t
Valid prediction for GeneMark_model.15070_t
Couldn't classify 126463, 126591
Couldn't classify 129596, 129729
Sorry, prediction pasa_asmbl_41146.p1 fails validation.
(TGC)	 AC	126463-126591	GT	AGG
(AAT)	 AG	128609-128834	GT	CGG
(GTC)	 AG	129596-129729	GA	CCG
-recovered pasa_asmbl_41146.p1, internal, 128609, 128834
Valid prediction for GlimmerHMM_glimmerT_9120-T1
Valid prediction for GeneMark_model.15063_t
Valid prediction for GeneMark_model.15046_t
Valid prediction for Augustus_model.g5938.t1
Valid prediction for GlimmerHMM_glimmerT_9126-T1
Valid prediction for GeneMark_model.15092_t
Valid prediction for GeneMark_model.15026_t
Couldn't classify 62443, 62868
Sorry, prediction pasa_asmbl_41149.p2 fails validation.
(ATG)	 GG	62443-62868	AG	GCA
Valid prediction for GlimmerHMM_glimmerT_9130-T1
Valid prediction for Augustus_model.g5925.t1
Valid prediction for snap_scaffold_4-snap.625-T1
Valid prediction for GlimmerHMM_glimmerT_9122-T1
Valid prediction for GeneMark_model.15071_t
Valid prediction for GeneMark_model.15096_t
Valid prediction for snap_scaffold_4-snap.622-T1
Valid prediction for GlimmerHMM_glimmerT_9145-T1
Valid prediction for GeneMark_model.15021_t
Valid prediction for GeneMark_model.15065_t
Valid prediction for GeneMark_model.15040_t
Valid prediction for snap_scaffold_4-snap.602-T1
Valid prediction for snap_scaffold_4-snap.601-T1
Valid prediction for snap_scaffold_4-snap.584-T1
Valid prediction for GeneMark_model.15034_t
Valid prediction for snap_scaffold_4-snap.583-T1
Valid prediction for GeneMark_model.15044_t
Valid prediction for Augustus_model.g5935.t1
Valid prediction for GeneMark_model.15028_t
Valid prediction for snap_scaffold_4-snap.615-T1
Valid prediction for GeneMark_model.15073_t
Valid prediction for GeneMark_model.15080_t
Valid prediction for snap_scaffold_4-snap.603-T1
Valid prediction for GeneMark_model.15013_t
Valid prediction for GlimmerHMM_glimmerT_9129-T1
Valid prediction for GeneMark_model.15090_t
Valid prediction for snap_scaffold_4-snap.616-T1
Valid prediction for snap_scaffold_4-snap.626-T1
Valid prediction for GeneMark_model.15032_t
Couldn't classify 240789, 241298
Sorry, prediction pasa_asmbl_42357.p1 fails validation.
(ATG)	 CT	240789-241298	AG	GAA
Valid prediction for snap_scaffold_4-snap.594-T1
Valid prediction for Augustus_model.g5930.t1
Valid prediction for Augustus_model.g5933.t1
Valid prediction for snap_scaffold_4-snap.591-T1
Valid prediction for GeneMark_model.15062_t
Valid prediction for snap_scaffold_4-snap.588-T1
Valid prediction for GlimmerHMM_glimmerT_9123-T1
Valid prediction for GeneMark_model.15054_t
Valid prediction for GeneMark_model.15018_t
Valid prediction for GlimmerHMM_glimmerT_9142-T1
Valid prediction for Augustus_model.g5931.t1
Valid prediction for Augustus_model.g5921.t1
Valid prediction for GeneMark_model.15100_t
Valid prediction for snap_scaffold_4-snap.592-T1
Couldn't classify 161093, 161229
Sorry, prediction pasa_asmbl_41142.p1 fails validation.
(GCT)	 TA	161093-161229	GT	AGG
(GAA)	 AG	162326-162482	GT	AGG
(GCA)	 AG	163166-163366	GT	GGG
(AGG)	 AG	164452-164627	GT	AAG
(GTG)	 AG	164765-164912	AC	AAA
-recovered pasa_asmbl_41142.p1, terminal, 164765, 164912
-recovered pasa_asmbl_41142.p1, internal, 162326, 162482
-recovered pasa_asmbl_41142.p1, internal, 163166, 163366
-recovered pasa_asmbl_41142.p1, internal, 164452, 164627
Valid prediction for GeneMark_model.15050_t
Valid prediction for GlimmerHMM_glimmerT_9146-T1
Valid prediction for GlimmerHMM_glimmerT_9140-T1
Valid prediction for GeneMark_model.15094_t
Couldn't classify 232736, 232859
Couldn't classify 233520, 233566
Sorry, prediction pasa_asmbl_41141.p1 fails validation.
(GTC)	 CA	232736-232859	GT	AGG
(ACC)	 AG	233162-233302	GT	AGG
(ATA)	 AG	233520-233566	CC	TGC
-recovered pasa_asmbl_41141.p1, internal, 233162, 233302
Valid prediction for snap_scaffold_4-snap.599-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14297, rend_intergenic: 4597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20684, rend_intergenic: 19066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42302, rend_intergenic: 29235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45525, rend_intergenic: 43485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57799, rend_intergenic: 51056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59326, rend_intergenic: 58198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65708, rend_intergenic: 61439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94747, rend_intergenic: 73495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106109, rend_intergenic: 96669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119074, rend_intergenic: 109821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195562, rend_intergenic: 128354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198709, rend_intergenic: 195617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203628, rend_intergenic: 199378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218881, rend_intergenic: 204442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222386, rend_intergenic: 221119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235435, rend_intergenic: 222601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239451, rend_intergenic: 236129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 278942, rend_intergenic: 271332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281032, rend_intergenic: 279355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288937, rend_intergenic: 281797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292405, rend_intergenic: 289132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 293261
-exon list size: 1171


building trellis

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22.9    
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23.9    
24.0    
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24.6    
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24.8    
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25.1    
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28.0    
28.0    
28.1    
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28.6    
28.6    
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28.8    
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29.0    
29.1    
29.2    
29.2    
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29.5    
29.6    
29.7    
29.8    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
-found 50 predictions from path traversal
Error with prediction: snap lend_intergenic: 14297, rend_intergenic: 4597  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20684, rend_intergenic: 19066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42302, rend_intergenic: 29235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45525, rend_intergenic: 43485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57799, rend_intergenic: 51056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59326, rend_intergenic: 58198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65708, rend_intergenic: 61439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94747, rend_intergenic: 73495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106109, rend_intergenic: 96669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119074, rend_intergenic: 109821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195562, rend_intergenic: 128354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198709, rend_intergenic: 195617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203628, rend_intergenic: 199378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218881, rend_intergenic: 204442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222386, rend_intergenic: 221119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235435, rend_intergenic: 222601  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239451, rend_intergenic: 236129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 278942, rend_intergenic: 271332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281032, rend_intergenic: 279355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288937, rend_intergenic: 281797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292405, rend_intergenic: 289132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 278954 - 293261
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support