-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_2164895-2413920

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.526-T1
Valid prediction for snap_scaffold_4-snap.530-T1
Valid prediction for GeneMark_model.14932_t
Valid prediction for GeneMark_model.14903_t
Valid prediction for GlimmerHMM_glimmerT_9057-T1
Valid prediction for snap_scaffold_4-snap.522-T1
Valid prediction for snap_scaffold_4-snap.537-T1
Valid prediction for GeneMark_model.14907_t
Valid prediction for Augustus_model.g5895.t1
Valid prediction for GeneMark_model.14858_t
Valid prediction for snap_scaffold_4-snap.501-T1
Valid prediction for GlimmerHMM_glimmerT_9055-T1
Valid prediction for GeneMark_model.14890_t
Valid prediction for snap_scaffold_4-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_9086-T1
Valid prediction for snap_scaffold_4-snap.535-T1
Valid prediction for GlimmerHMM_glimmerT_9061-T1
Valid prediction for GlimmerHMM_glimmerT_9074-T1
Valid prediction for GeneMark_model.14911_t
Valid prediction for GeneMark_model.14867_t
Valid prediction for snap_scaffold_4-snap.506-T1
Valid prediction for Augustus_model.g5903.t1
Valid prediction for GeneMark_model.14924_t
Valid prediction for GeneMark_model.14929_t
Valid prediction for snap_scaffold_4-snap.534-T1
Valid prediction for GeneMark_model.14922_t
Valid prediction for GeneMark_model.14927_t
Valid prediction for snap_scaffold_4-snap.498-T1
Valid prediction for GeneMark_model.14919_t
Valid prediction for GeneMark_model.14897_t
Valid prediction for GeneMark_model.14871_t
Valid prediction for GlimmerHMM_glimmerT_9063-T1
Valid prediction for GlimmerHMM_glimmerT_9077-T1
Valid prediction for GlimmerHMM_glimmerT_9065-T1
Valid prediction for Augustus_model.g5891.t1
Valid prediction for GlimmerHMM_glimmerT_9085-T1
Valid prediction for GlimmerHMM_glimmerT_9052-T1
Valid prediction for snap_scaffold_4-snap.516-T1
Valid prediction for snap_scaffold_4-snap.512-T1
Valid prediction for GeneMark_model.14865_t
Valid prediction for GeneMark_model.14913_t
Valid prediction for GeneMark_model.14917_t
Valid prediction for snap_scaffold_4-snap.487-T1
Valid prediction for GeneMark_model.14882_t
Valid prediction for GeneMark_model.14914_t
Valid prediction for snap_scaffold_4-snap.489-T1
Valid prediction for snap_scaffold_4-snap.485-T1
Valid prediction for GeneMark_model.14931_t
Valid prediction for Augustus_model.g5897.t1
Valid prediction for GeneMark_model.14926_t
Valid prediction for GeneMark_model.14880_t
Valid prediction for GeneMark_model.14888_t
Valid prediction for GeneMark_model.14863_t
Valid prediction for GeneMark_model.14862_t
Valid prediction for snap_scaffold_4-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_9067-T1
Valid prediction for snap_scaffold_4-snap.491-T1
Valid prediction for snap_scaffold_4-snap.493-T1
Valid prediction for snap_scaffold_4-snap.511-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.496-T1
Valid prediction for GlimmerHMM_glimmerT_9084-T1
Valid prediction for GeneMark_model.14874_t
Valid prediction for snap_scaffold_4-snap.507-T1
Valid prediction for GeneMark_model.14895_t
Valid prediction for snap_scaffold_4-snap.503-T1
Valid prediction for snap_scaffold_4-snap.514-T1
Valid prediction for GeneMark_model.14868_t
Valid prediction for GeneMark_model.14856_t
Valid prediction for GlimmerHMM_glimmerT_9066-T1
Valid prediction for GeneMark_model.14909_t
Valid prediction for snap_scaffold_4-snap.495-T1
Valid prediction for GlimmerHMM_glimmerT_9062-T1
Valid prediction for GeneMark_model.14905_t
Valid prediction for GlimmerHMM_glimmerT_9068-T1
Valid prediction for GeneMark_model.14876_t
Valid prediction for Augustus_model.g5893.t1
Valid prediction for GlimmerHMM_glimmerT_9059-T1
Valid prediction for snap_scaffold_4-snap.490-T1
Valid prediction for GeneMark_model.14893_t
Valid prediction for snap_scaffold_4-snap.508-T1
Valid prediction for snap_scaffold_4-snap.483-T1
Valid prediction for snap_scaffold_4-snap.532-T1
Valid prediction for GeneMark_model.14878_t
Valid prediction for snap_scaffold_4-snap.520-T1
Valid prediction for GeneMark_model.14886_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.14910_t
Valid prediction for GlimmerHMM_glimmerT_9050-T1
Valid prediction for GeneMark_model.14916_t
Valid prediction for GeneMark_model.14869_t
Valid prediction for snap_scaffold_4-snap.538-T1
Valid prediction for Augustus_model.g5896.t1
Valid prediction for snap_scaffold_4-snap.519-T1
Valid prediction for GlimmerHMM_glimmerT_9082-T1
Valid prediction for snap_scaffold_4-snap.513-T1
Valid prediction for GeneMark_model.14855_t
Valid prediction for GeneMark_model.14900_t
Valid prediction for snap_scaffold_4-snap.529-T1
Valid prediction for GeneMark_model.14879_t
Valid prediction for snap_scaffold_4-snap.482-T1
Valid prediction for GeneMark_model.14864_t
Valid prediction for GlimmerHMM_glimmerT_9053-T1
Valid prediction for GeneMark_model.14883_t
Valid prediction for snap_scaffold_4-snap.484-T1
Valid prediction for GeneMark_model.14920_t
Valid prediction for GeneMark_model.14877_t
Valid prediction for snap_scaffold_4-snap.486-T1
Valid prediction for GeneMark_model.14894_t
Valid prediction for GlimmerHMM_glimmerT_9051-T1
Valid prediction for snap_scaffold_4-snap.494-T1
Valid prediction for snap_scaffold_4-snap.521-T1
Valid prediction for Augustus_model.g5900.t1
Valid prediction for GeneMark_model.14925_t
Valid prediction for GeneMark_model.14884_t
Valid prediction for Augustus_model.g5902.t1
Valid prediction for Augustus_model.g5899.t1
Valid prediction for GeneMark_model.14930_t
Valid prediction for HiQ_model.g5892.t1
Valid prediction for Augustus_model.g5901.t1
Valid prediction for GlimmerHMM_glimmerT_9078-T1
Valid prediction for GlimmerHMM_glimmerT_9080-T1
Valid prediction for GeneMark_model.14906_t
Valid prediction for GeneMark_model.14915_t
Valid prediction for GeneMark_model.14866_t
Valid prediction for GeneMark_model.14904_t
Valid prediction for snap_scaffold_4-snap.499-T1
Valid prediction for GeneMark_model.14861_t
Valid prediction for GeneMark_model.14898_t
Valid prediction for snap_scaffold_4-snap.533-T1
Valid prediction for snap_scaffold_4-snap.500-T1
Valid prediction for snap_scaffold_4-snap.518-T1
Valid prediction for GeneMark_model.14857_t
Valid prediction for GlimmerHMM_glimmerT_9075-T1
Valid prediction for CodingQuarry_transcript_48796-T1
Valid prediction for GlimmerHMM_glimmerT_9081-T1
Valid prediction for GeneMark_model.14923_t
Valid prediction for snap_scaffold_4-snap.523-T1
Valid prediction for GeneMark_model.14885_t
Valid prediction for snap_scaffold_4-snap.497-T1
Valid prediction for GeneMark_model.14870_t
Valid prediction for Augustus_model.g5898.t1
Valid prediction for snap_scaffold_4-snap.515-T1
Valid prediction for GlimmerHMM_glimmerT_9058-T1
Valid prediction for GlimmerHMM_glimmerT_9056-T1
Valid prediction for GlimmerHMM_glimmerT_9071-T1
Valid prediction for GeneMark_model.14901_t
Valid prediction for GlimmerHMM_glimmerT_9069-T1
Valid prediction for snap_scaffold_4-snap.492-T1
Couldn't classify 210789, 211011
Couldn't classify 214224, 214290
Sorry, prediction pasa_asmbl_41134.p1 fails validation.
(ACA)	 TG	210789-211011	GT	TCG
(CCT)	 AG	211282-211328	GT	AGG
(TGC)	 AG	211804-211912	GT	GGG
(TGA)	 AG	212764-212869	GT	GGG
(GCC)	 AG	214224-214290	TG	GGT
-recovered pasa_asmbl_41134.p1, internal, 211282, 211328
-recovered pasa_asmbl_41134.p1, internal, 211804, 211912
-recovered pasa_asmbl_41134.p1, internal, 212764, 212869
Valid prediction for GeneMark_model.14887_t
Valid prediction for GeneMark_model.14881_t
Valid prediction for GlimmerHMM_glimmerT_9054-T1
Valid prediction for Augustus_model.g5894.t1
Valid prediction for snap_scaffold_4-snap.527-T1
Valid prediction for GlimmerHMM_glimmerT_9083-T1
Valid prediction for GeneMark_model.14859_t
Valid prediction for GlimmerHMM_glimmerT_9073-T1
Valid prediction for GeneMark_model.14889_t
Valid prediction for snap_scaffold_4-snap.488-T1
Valid prediction for GeneMark_model.14902_t
Valid prediction for GeneMark_model.14899_t
Valid prediction for GeneMark_model.14933_t
Valid prediction for snap_scaffold_4-snap.504-T1
Valid prediction for GlimmerHMM_glimmerT_9076-T1
Valid prediction for GeneMark_model.14918_t
Valid prediction for GeneMark_model.14872_t
Valid prediction for snap_scaffold_4-snap.505-T1
Valid prediction for GlimmerHMM_glimmerT_9060-T1
Valid prediction for snap_scaffold_4-snap.536-T1
Valid prediction for snap_scaffold_4-snap.525-T1
Valid prediction for snap_scaffold_4-snap.524-T1
Valid prediction for snap_scaffold_4-snap.502-T1
Valid prediction for GeneMark_model.14892_t
Valid prediction for GeneMark_model.14896_t
Valid prediction for GeneMark_model.14875_t
Valid prediction for GeneMark_model.14854_t
Valid prediction for Augustus_model.g5904.t1
Valid prediction for GeneMark_model.14912_t
Valid prediction for GlimmerHMM_glimmerT_9070-T1
Valid prediction for snap_scaffold_4-snap.531-T1
Valid prediction for GeneMark_model.14928_t
Valid prediction for GeneMark_model.14908_t
Valid prediction for snap_scaffold_4-snap.510-T1
Valid prediction for snap_scaffold_4-snap.509-T1
Valid prediction for GeneMark_model.14873_t
Valid prediction for GlimmerHMM_glimmerT_9072-T1
Valid prediction for GeneMark_model.14860_t
Valid prediction for GlimmerHMM_glimmerT_9064-T1
Valid prediction for GlimmerHMM_glimmerT_9079-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14760, rend_intergenic: 3060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21217, rend_intergenic: 14983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24083, rend_intergenic: 21389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32544, rend_intergenic: 28925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37793, rend_intergenic: 33097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43545, rend_intergenic: 38977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46657, rend_intergenic: 44844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65718, rend_intergenic: 47251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76768, rend_intergenic: 67141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78532, rend_intergenic: 76885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81557, rend_intergenic: 78532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93856, rend_intergenic: 81928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104518, rend_intergenic: 102818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107596, rend_intergenic: 104536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118656, rend_intergenic: 113130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131814, rend_intergenic: 123306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149441, rend_intergenic: 137059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151404, rend_intergenic: 150151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155585, rend_intergenic: 152799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162718, rend_intergenic: 156478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168865, rend_intergenic: 162782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172460, rend_intergenic: 170788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172733, rend_intergenic: 172600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174259, rend_intergenic: 173312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177870, rend_intergenic: 174412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192029, rend_intergenic: 184677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195764, rend_intergenic: 195055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197216, rend_intergenic: 196579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227183, rend_intergenic: 224671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239007, rend_intergenic: 227670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246730, rend_intergenic: 242843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 249026
-exon list size: 958


building trellis

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50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 59 predictions from path traversal
Error with prediction: snap lend_intergenic: 14760, rend_intergenic: 3060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21217, rend_intergenic: 14983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24083, rend_intergenic: 21389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32544, rend_intergenic: 28925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37793, rend_intergenic: 33097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43545, rend_intergenic: 38977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46657, rend_intergenic: 44844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65718, rend_intergenic: 47251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76768, rend_intergenic: 67141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78532, rend_intergenic: 76885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81557, rend_intergenic: 78532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93856, rend_intergenic: 81928  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104518, rend_intergenic: 102818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107596, rend_intergenic: 104536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118656, rend_intergenic: 113130  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131814, rend_intergenic: 123306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149441, rend_intergenic: 137059  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151404, rend_intergenic: 150151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155585, rend_intergenic: 152799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162718, rend_intergenic: 156478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168865, rend_intergenic: 162782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172460, rend_intergenic: 170788  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172733, rend_intergenic: 172600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174259, rend_intergenic: 173312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177870, rend_intergenic: 174412  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192029, rend_intergenic: 184677  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195764, rend_intergenic: 195055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197216, rend_intergenic: 196579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227183, rend_intergenic: 224671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239007, rend_intergenic: 227670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246730, rend_intergenic: 242843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support