-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_1900966-2166399

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68674, 68937
Sorry, prediction pasa_asmbl_42475.p1 fails validation.
(ACA)	 CC	68674-68937	GT	AGG
(GAT)	 AG	69187-69338	GT	ACG
(ACA)	 AG	70656-70788	GT	AGG
(GTC)	 AG	71616-71822	AG	GAA
-recovered pasa_asmbl_42475.p1, terminal, 71616, 71822
-recovered pasa_asmbl_42475.p1, internal, 69187, 69338
-recovered pasa_asmbl_42475.p1, internal, 70656, 70788
Valid prediction for GeneMark_model.14779_t
Valid prediction for GeneMark_model.14803_t
Valid prediction for GeneMark_model.14818_t
Valid prediction for GeneMark_model.14784_t
Valid prediction for snap_scaffold_4-snap.469-T1
Valid prediction for Augustus_model.g5874.t1
Valid prediction for CodingQuarry_transcript_48790-T1
Valid prediction for Augustus_model.g5880.t1
Valid prediction for GlimmerHMM_glimmerT_9017-T1
Valid prediction for GlimmerHMM_glimmerT_9019-T1
Valid prediction for GeneMark_model.14812_t
Valid prediction for GlimmerHMM_glimmerT_9023-T1
Valid prediction for snap_scaffold_4-snap.437-T1
Valid prediction for GlimmerHMM_glimmerT_9033-T1
Valid prediction for snap_scaffold_4-snap.445-T1
Valid prediction for snap_scaffold_4-snap.464-T1
Valid prediction for snap_scaffold_4-snap.455-T1
Valid prediction for snap_scaffold_4-snap.453-T1
Valid prediction for GeneMark_model.14816_t
Valid prediction for GeneMark_model.14835_t
Valid prediction for GeneMark_model.14820_t
Valid prediction for GeneMark_model.14788_t
Valid prediction for GeneMark_model.14824_t
Valid prediction for snap_scaffold_4-snap.475-T1
Valid prediction for GeneMark_model.14843_t
Valid prediction for GeneMark_model.14830_t
Valid prediction for snap_scaffold_4-snap.460-T1
Valid prediction for CodingQuarry_transcript_48794-T1
Couldn't classify 14309, 14523
Couldn't classify 15788, 15974
Sorry, prediction pasa_asmbl_42467.p1 fails validation.
(GAT)	 CA	14309-14523	GT	AGG
(GAG)	 AG	15788-15974	AA	GAA
Valid prediction for Augustus_model.g5882.t1
Valid prediction for GlimmerHMM_glimmerT_9034-T1
Valid prediction for GeneMark_model.14853_t
Valid prediction for GeneMark_model.14841_t
Valid prediction for GeneMark_model.14846_t
Valid prediction for snap_scaffold_4-snap.446-T1
Valid prediction for GeneMark_model.14782_t
Valid prediction for GeneMark_model.14793_t
Valid prediction for GlimmerHMM_glimmerT_9043-T1
Valid prediction for GeneMark_model.14822_t
Valid prediction for GeneMark_model.14800_t
Valid prediction for GeneMark_model.14836_t
Valid prediction for GlimmerHMM_glimmerT_9031-T1
Valid prediction for snap_scaffold_4-snap.451-T1
Valid prediction for GlimmerHMM_glimmerT_9016-T1
Valid prediction for HiQ_model.g5876.t1
Valid prediction for GlimmerHMM_glimmerT_9026-T1
Valid prediction for Augustus_model.g5877.t1
Valid prediction for CodingQuarry_transcript_48791-T1
Valid prediction for GlimmerHMM_glimmerT_9040-T1
Valid prediction for GeneMark_model.14839_t
Valid prediction for snap_scaffold_4-snap.448-T1
Valid prediction for snap_scaffold_4-snap.473-T1
Couldn't classify 32392, 32706
Sorry, prediction pasa_asmbl_43629.p2 fails validation.
(CCA)	 CT	32392-32706	GG	AAG
Valid prediction for GeneMark_model.14795_t
Valid prediction for GlimmerHMM_glimmerT_9021-T1
Valid prediction for GeneMark_model.14828_t
Valid prediction for GeneMark_model.14814_t
Valid prediction for GeneMark_model.14826_t
Valid prediction for GeneMark_model.14778_t
Valid prediction for snap_scaffold_4-snap.458-T1
Valid prediction for GeneMark_model.14851_t
Couldn't classify 32737, 33153
Sorry, prediction pasa_asmbl_42470.p1 fails validation.
(CCT)	 GA	32737-33153	CC	AAC
Valid prediction for GeneMark_model.14849_t
Valid prediction for GlimmerHMM_glimmerT_9024-T1
Valid prediction for GlimmerHMM_glimmerT_9029-T1
Valid prediction for snap_scaffold_4-snap.463-T1
Valid prediction for GeneMark_model.14809_t
Valid prediction for GlimmerHMM_glimmerT_9025-T1
Valid prediction for HiQ_model.g5875.t1
Valid prediction for snap_scaffold_4-snap.477-T1
Valid prediction for GlimmerHMM_glimmerT_9041-T1
Valid prediction for snap_scaffold_4-snap.452-T1
Valid prediction for snap_scaffold_4-snap.456-T1
Valid prediction for GeneMark_model.14808_t
Valid prediction for GeneMark_model.14798_t
Valid prediction for GeneMark_model.14780_t
Valid prediction for GlimmerHMM_glimmerT_9028-T1
Valid prediction for GeneMark_model.14811_t
Valid prediction for snap_scaffold_4-snap.441-T1
Valid prediction for snap_scaffold_4-snap.438-T1
Couldn't classify 73325, 73427
Sorry, prediction pasa_asmbl_42479.p1 fails validation.
(AAA)	 AC	73325-73427	GT	TAG
(TCA)	 AG	73536-75351	GT	AGG
(GTT)	 AG	75606-75689	GT	GGG
(ACT)	 AG	75959-76042	GT	AAG
(GAT)	 AG	76386-76469	GT	GGG
(GAT)	 AG	76688-76771	GT	AGG
(CCT)	 AG	76853-76936	GT	TGG
(GCT)	 AG	77117-77200	GT	TGG
(GCT)	 AG	77336-77419	GT	TGG
(TGT)	 AG	78676-78748	AG	GAA
-recovered pasa_asmbl_42479.p1, terminal, 78676, 78748
-recovered pasa_asmbl_42479.p1, internal, 73536, 75351
-recovered pasa_asmbl_42479.p1, internal, 75606, 75689
-recovered pasa_asmbl_42479.p1, internal, 75959, 76042
-recovered pasa_asmbl_42479.p1, internal, 76386, 76469
-recovered pasa_asmbl_42479.p1, internal, 76688, 76771
-recovered pasa_asmbl_42479.p1, internal, 76853, 76936
-recovered pasa_asmbl_42479.p1, internal, 77117, 77200
-recovered pasa_asmbl_42479.p1, internal, 77336, 77419
Valid prediction for GeneMark_model.14847_t
Valid prediction for GeneMark_model.14833_t
Valid prediction for snap_scaffold_4-snap.444-T1
Valid prediction for snap_scaffold_4-snap.435-T1
Valid prediction for snap_scaffold_4-snap.474-T1
Valid prediction for GeneMark_model.14805_t
Valid prediction for GeneMark_model.14819_t
Valid prediction for snap_scaffold_4-snap.461-T1
Valid prediction for Augustus_model.g5879.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.14834_t
Valid prediction for GlimmerHMM_glimmerT_9018-T1
Valid prediction for GlimmerHMM_glimmerT_9042-T1
Valid prediction for snap_scaffold_4-snap.439-T1
Valid prediction for GeneMark_model.14844_t
Valid prediction for GeneMark_model.14829_t
Valid prediction for GeneMark_model.14823_t
Valid prediction for GeneMark_model.14813_t
Valid prediction for snap_scaffold_4-snap.436-T1
Valid prediction for snap_scaffold_4-snap.466-T1
Valid prediction for snap_scaffold_4-snap.447-T1
Valid prediction for GeneMark_model.14791_t
Valid prediction for snap_scaffold_4-snap.457-T1
Valid prediction for snap_scaffold_4-snap.472-T1
Valid prediction for GlimmerHMM_glimmerT_9048-T1
Valid prediction for GeneMark_model.14832_t
Valid prediction for GeneMark_model.14781_t
Valid prediction for snap_scaffold_4-snap.481-T1
Valid prediction for snap_scaffold_4-snap.471-T1
Valid prediction for snap_scaffold_4-snap.467-T1
Valid prediction for GlimmerHMM_glimmerT_9037-T1
Valid prediction for snap_scaffold_4-snap.434-T1
Valid prediction for Augustus_model.g5886.t1
Valid prediction for Augustus_model.g5881.t1
Valid prediction for GlimmerHMM_glimmerT_9015-T1
Valid prediction for GlimmerHMM_glimmerT_9046-T1
Valid prediction for snap_scaffold_4-snap.442-T1
Valid prediction for snap_scaffold_4-snap.440-T1
Valid prediction for Augustus_model.g5890.t1
Valid prediction for snap_scaffold_4-snap.462-T1
Valid prediction for GeneMark_model.14825_t
Valid prediction for GeneMark_model.14821_t
Valid prediction for GeneMark_model.14786_t
Valid prediction for Augustus_model.g5884.t1
Valid prediction for GlimmerHMM_glimmerT_9020-T1
Valid prediction for GeneMark_model.14802_t
Valid prediction for Augustus_model.g5885.t1
Valid prediction for GeneMark_model.14792_t
Valid prediction for GeneMark_model.14845_t
Valid prediction for GlimmerHMM_glimmerT_9045-T1
Valid prediction for GeneMark_model.14831_t
Valid prediction for snap_scaffold_4-snap.465-T1
Valid prediction for snap_scaffold_4-snap.468-T1
Valid prediction for snap_scaffold_4-snap.476-T1
Valid prediction for GlimmerHMM_glimmerT_9027-T1
Valid prediction for snap_scaffold_4-snap.459-T1
Valid prediction for GeneMark_model.14799_t
Valid prediction for GeneMark_model.14848_t
Valid prediction for GlimmerHMM_glimmerT_9047-T1
Valid prediction for GeneMark_model.14787_t
Valid prediction for snap_scaffold_4-snap.470-T1
Valid prediction for GeneMark_model.14827_t
Valid prediction for GeneMark_model.14850_t
Valid prediction for GeneMark_model.14796_t
Valid prediction for GlimmerHMM_glimmerT_9030-T1
Valid prediction for Augustus_model.g5889.t1
Valid prediction for snap_scaffold_4-snap.479-T1
Valid prediction for GlimmerHMM_glimmerT_9044-T1
Valid prediction for snap_scaffold_4-snap.454-T1
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.443-T1
Valid prediction for snap_scaffold_4-snap.449-T1
Valid prediction for GlimmerHMM_glimmerT_9039-T1
Valid prediction for snap_scaffold_4-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_9035-T1
Valid prediction for GlimmerHMM_glimmerT_9022-T1
Valid prediction for GeneMark_model.14837_t
Valid prediction for GlimmerHMM_glimmerT_9036-T1
Valid prediction for Augustus_model.g5883.t1
Valid prediction for GlimmerHMM_glimmerT_9032-T1
Valid prediction for GeneMark_model.14806_t
Valid prediction for GeneMark_model.14852_t
Valid prediction for GeneMark_model.14838_t
Valid prediction for snap_scaffold_4-snap.450-T1
Valid prediction for GeneMark_model.14783_t
Valid prediction for GeneMark_model.14815_t
Valid prediction for GeneMark_model.14794_t
Valid prediction for GeneMark_model.14840_t
Valid prediction for GeneMark_model.14790_t
Valid prediction for GeneMark_model.14842_t
Valid prediction for Augustus_model.g5888.t1
Valid prediction for GlimmerHMM_glimmerT_9038-T1
Valid prediction for GeneMark_model.14797_t
Valid prediction for GeneMark_model.14807_t
Valid prediction for Augustus_model.g5878.t1
Valid prediction for GeneMark_model.14785_t
Valid prediction for GeneMark_model.14810_t
Valid prediction for GeneMark_model.14801_t
Valid prediction for GeneMark_model.14804_t
Valid prediction for Augustus_model.g5887.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8329, rend_intergenic: 3270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31235, rend_intergenic: 19106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36236, rend_intergenic: 33115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41719, rend_intergenic: 37829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57116, rend_intergenic: 54532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67333, rend_intergenic: 59691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100965, rend_intergenic: 82777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104830, rend_intergenic: 101053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109007, rend_intergenic: 104833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117495, rend_intergenic: 109034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134808, rend_intergenic: 126005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142183, rend_intergenic: 134956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168511, rend_intergenic: 142755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197631, rend_intergenic: 175163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218034, rend_intergenic: 199806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232772, rend_intergenic: 222314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239537, rend_intergenic: 234277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245520, rend_intergenic: 239642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 265434
-exon list size: 1174


building trellis

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45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
-found 47 predictions from path traversal
Error with prediction: snap lend_intergenic: 8329, rend_intergenic: 3270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31235, rend_intergenic: 19106  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36236, rend_intergenic: 33115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41719, rend_intergenic: 37829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57116, rend_intergenic: 54532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67333, rend_intergenic: 59691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100965, rend_intergenic: 82777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104830, rend_intergenic: 101053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109007, rend_intergenic: 104833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117495, rend_intergenic: 109034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134808, rend_intergenic: 126005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142183, rend_intergenic: 134956  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168511, rend_intergenic: 142755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197631, rend_intergenic: 175163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218034, rend_intergenic: 199806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 232772, rend_intergenic: 222314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 239537, rend_intergenic: 234277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245520, rend_intergenic: 239642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support