-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_18459330-18748094

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.3823-T1
Valid prediction for GlimmerHMM_glimmerT_11384-T1
Valid prediction for snap_scaffold_4-snap.3825-T1
Valid prediction for snap_scaffold_4-snap.3842-T1
Valid prediction for GlimmerHMM_glimmerT_11407-T1
Valid prediction for Augustus_model.g7533.t1
Valid prediction for GlimmerHMM_glimmerT_11401-T1
Valid prediction for GeneMark_model.18833_t
Valid prediction for snap_scaffold_4-snap.3791-T1
Valid prediction for GlimmerHMM_glimmerT_11402-T1
Valid prediction for snap_scaffold_4-snap.3840-T1
Valid prediction for snap_scaffold_4-snap.3816-T1
Valid prediction for GeneMark_model.18864_t
Valid prediction for Augustus_model.g7521.t1
Valid prediction for snap_scaffold_4-snap.3802-T1
Valid prediction for snap_scaffold_4-snap.3845-T1
Valid prediction for GeneMark_model.18871_t
Valid prediction for GeneMark_model.18827_t
Valid prediction for GlimmerHMM_glimmerT_11392-T1
Valid prediction for snap_scaffold_4-snap.3818-T1
Valid prediction for GeneMark_model.18867_t
Valid prediction for GeneMark_model.18886_t
Valid prediction for snap_scaffold_4-snap.3831-T1
Valid prediction for snap_scaffold_4-snap.3806-T1
Valid prediction for GeneMark_model.18840_t
Valid prediction for GeneMark_model.18783_t
Valid prediction for snap_scaffold_4-snap.3794-T1
Valid prediction for snap_scaffold_4-snap.3843-T1
Valid prediction for snap_scaffold_4-snap.3837-T1
Valid prediction for GeneMark_model.18823_t
Valid prediction for snap_scaffold_4-snap.3827-T1
Valid prediction for snap_scaffold_4-snap.3799-T1
Valid prediction for GeneMark_model.18778_t
Valid prediction for GeneMark_model.18780_t
Valid prediction for snap_scaffold_4-snap.3803-T1
Valid prediction for GeneMark_model.18849_t
Valid prediction for GlimmerHMM_glimmerT_11380-T1
Valid prediction for GeneMark_model.18792_t
Valid prediction for GeneMark_model.18875_t
Valid prediction for snap_scaffold_4-snap.3833-T1
Valid prediction for snap_scaffold_4-snap.3836-T1
Valid prediction for GeneMark_model.18825_t
Valid prediction for GeneMark_model.18862_t
Valid prediction for GeneMark_model.18782_t
Valid prediction for GeneMark_model.18785_t
Valid prediction for snap_scaffold_4-snap.3829-T1
Valid prediction for GeneMark_model.18839_t
Valid prediction for GeneMark_model.18878_t
Valid prediction for snap_scaffold_4-snap.3824-T1
Valid prediction for GlimmerHMM_glimmerT_11400-T1
Valid prediction for GeneMark_model.18880_t
Valid prediction for GeneMark_model.18869_t
Valid prediction for GeneMark_model.18855_t
Valid prediction for GlimmerHMM_glimmerT_11395-T1
Valid prediction for GeneMark_model.18837_t
Valid prediction for snap_scaffold_4-snap.3821-T1
Valid prediction for Augustus_model.g7528.t1
Valid prediction for snap_scaffold_4-snap.3810-T1
Valid prediction for GeneMark_model.18819_t
Valid prediction for GeneMark_model.18797_t
Valid prediction for GeneMark_model.18789_t
Valid prediction for snap_scaffold_4-snap.3849-T1
Valid prediction for GlimmerHMM_glimmerT_11405-T1
Valid prediction for GeneMark_model.18873_t
Valid prediction for GeneMark_model.18790_t
Valid prediction for GeneMark_model.18809_t
Valid prediction for GeneMark_model.18835_t
Valid prediction for GeneMark_model.18844_t
Valid prediction for GlimmerHMM_glimmerT_11408-T1
Valid prediction for GeneMark_model.18813_t
Valid prediction for GeneMark_model.18858_t
Valid prediction for snap_scaffold_4-snap.3797-T1
Valid prediction for GeneMark_model.18842_t
Valid prediction for GeneMark_model.18857_t
Valid prediction for GeneMark_model.18787_t
Valid prediction for snap_scaffold_4-snap.3838-T1
Valid prediction for GeneMark_model.18821_t
Valid prediction for GlimmerHMM_glimmerT_11388-T1
Valid prediction for GeneMark_model.18851_t
Valid prediction for GeneMark_model.18847_t
Valid prediction for Augustus_model.g7529.t1
Valid prediction for Augustus_model.g7520.t1
Valid prediction for GeneMark_model.18815_t
Valid prediction for GlimmerHMM_glimmerT_11387-T1
Valid prediction for GeneMark_model.18811_t
Valid prediction for snap_scaffold_4-snap.3800-T1
Valid prediction for GeneMark_model.18799_t
Valid prediction for Augustus_model.g7534.t1
Valid prediction for GlimmerHMM_glimmerT_11396-T1
Valid prediction for GeneMark_model.18853_t
Valid prediction for GeneMark_model.18829_t
Valid prediction for snap_scaffold_4-snap.3792-T1
Valid prediction for snap_scaffold_4-snap.3834-T1
Valid prediction for GeneMark_model.18793_t
Valid prediction for GeneMark_model.18831_t
Valid prediction for GeneMark_model.18802_t
Valid prediction for GeneMark_model.18861_t
Valid prediction for GeneMark_model.18836_t
Valid prediction for GeneMark_model.18817_t
Valid prediction for snap_scaffold_4-snap.3819-T1
Valid prediction for GeneMark_model.18865_t
Valid prediction for GlimmerHMM_glimmerT_11381-T1
Valid prediction for GeneMark_model.18807_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.18786_t
Valid prediction for GeneMark_model.18814_t
Valid prediction for GeneMark_model.18854_t
Valid prediction for GlimmerHMM_glimmerT_11393-T1
Valid prediction for snap_scaffold_4-snap.3846-T1
Valid prediction for GeneMark_model.18798_t
Valid prediction for GlimmerHMM_glimmerT_11397-T1
Valid prediction for GeneMark_model.18822_t
Valid prediction for GeneMark_model.18794_t
Valid prediction for GlimmerHMM_glimmerT_11398-T1
Valid prediction for GlimmerHMM_glimmerT_11379-T1
Valid prediction for CodingQuarry_transcript_49270-T1
Valid prediction for GeneMark_model.18816_t
Valid prediction for snap_scaffold_4-snap.3807-T1
Valid prediction for snap_scaffold_4-snap.3822-T1
Valid prediction for snap_scaffold_4-snap.3801-T1
Valid prediction for GeneMark_model.18852_t
Couldn't classify 286216, 287370
Sorry, prediction pasa_asmbl_42121.p1 fails validation.
(CTC)	 GG	286216-287370	AA	CCA
Valid prediction for GlimmerHMM_glimmerT_11391-T1
Valid prediction for snap_scaffold_4-snap.3847-T1
Valid prediction for GeneMark_model.18859_t
Valid prediction for snap_scaffold_4-snap.3815-T1
Valid prediction for snap_scaffold_4-snap.3796-T1
Valid prediction for GeneMark_model.18810_t
Valid prediction for CodingQuarry_transcript_49272-T1
Valid prediction for GeneMark_model.18834_t
Valid prediction for snap_scaffold_4-snap.3808-T1
Valid prediction for GeneMark_model.18863_t
Valid prediction for GeneMark_model.18795_t
Valid prediction for snap_scaffold_4-snap.3798-T1
Valid prediction for pasa_asmbl_42129.p1
Valid prediction for Augustus_model.g7532.t1
Valid prediction for GeneMark_model.18885_t
Couldn't classify 287593, 287658
Couldn't classify 288247, 288316
Sorry, prediction pasa_asmbl_42120.p1 fails validation.
(TTT)	 CG	287593-287658	GT	GGG
(GAG)	 AG	287821-288089	GT	AGG
(ATT)	 AG	288247-288316	AA	CGA
-recovered pasa_asmbl_42120.p1, internal, 287821, 288089
Valid prediction for snap_scaffold_4-snap.3828-T1
Valid prediction for GlimmerHMM_glimmerT_11403-T1
Valid prediction for GeneMark_model.18868_t
Valid prediction for GlimmerHMM_glimmerT_11386-T1
Valid prediction for Augustus_model.g7522.t1
Valid prediction for snap_scaffold_4-snap.3826-T1
Valid prediction for GlimmerHMM_glimmerT_11385-T1
Valid prediction for HiQ_model.g7525.t1
Valid prediction for GeneMark_model.18803_t
Valid prediction for snap_scaffold_4-snap.3820-T1
Couldn't classify 181019, 181214
Couldn't classify 182936, 183045
Sorry, prediction pasa_asmbl_42246.p1 fails validation.
(GAG)	 CC	181019-181214	GT	CTG
(CTA)	 AG	181599-181664	GT	TGG
(GCT)	 AG	182546-182668	GT	AGG
(ATG)	 AG	182936-183045	CT	TGC
-recovered pasa_asmbl_42246.p1, internal, 181599, 181664
-recovered pasa_asmbl_42246.p1, internal, 182546, 182668
Valid prediction for Augustus_model.g7523.t1
Valid prediction for GlimmerHMM_glimmerT_11383-T1
Valid prediction for GeneMark_model.18876_t
Valid prediction for GeneMark_model.18841_t
Valid prediction for snap_scaffold_4-snap.3812-T1
Valid prediction for HiQ_model.g7530.t1
Valid prediction for GeneMark_model.18860_t
Valid prediction for GeneMark_model.18777_t
Valid prediction for snap_scaffold_4-snap.3850-T1
Valid prediction for pasa_asmbl_42127.p3
Valid prediction for GeneMark_model.18856_t
Valid prediction for GlimmerHMM_glimmerT_11394-T1
Valid prediction for snap_scaffold_4-snap.3809-T1
Valid prediction for GeneMark_model.18832_t
Valid prediction for GeneMark_model.18846_t
Valid prediction for GlimmerHMM_glimmerT_11389-T1
Valid prediction for snap_scaffold_4-snap.3817-T1
Valid prediction for GeneMark_model.18882_t
Valid prediction for snap_scaffold_4-snap.3841-T1
Valid prediction for snap_scaffold_4-snap.3813-T1
Valid prediction for GeneMark_model.18824_t
Valid prediction for GeneMark_model.18872_t
Valid prediction for GeneMark_model.18877_t
Valid prediction for snap_scaffold_4-snap.3793-T1
Valid prediction for GeneMark_model.18883_t
Valid prediction for GeneMark_model.18850_t
Valid prediction for HiQ_model.g7526.t1
Valid prediction for GeneMark_model.18791_t
Valid prediction for snap_scaffold_4-snap.3804-T1
Valid prediction for GlimmerHMM_glimmerT_11404-T1
Valid prediction for GeneMark_model.18828_t
Valid prediction for GeneMark_model.18804_t
Valid prediction for snap_scaffold_4-snap.3830-T1
Valid prediction for CodingQuarry_transcript_49267-T1
Valid prediction for GeneMark_model.18779_t
Valid prediction for GeneMark_model.18820_t
Valid prediction for GeneMark_model.18866_t
Valid prediction for snap_scaffold_4-snap.3839-T1
Valid prediction for CodingQuarry_transcript_49269-T1
Valid prediction for snap_scaffold_4-snap.3835-T1
Valid prediction for pasa_asmbl_42133.p1
Valid prediction for GeneMark_model.18781_t
Couldn't classify 257914, 258057
Couldn't classify 260291, 260419
Sorry, prediction pasa_asmbl_42123.p1 fails validation.
(GAG)	 AT	257914-258057	GT	AGG
(GCA)	 AG	259174-259263	GT	TGG
(TAT)	 AG	259688-259837	GT	AGG
(AAC)	 AG	260291-260419	GT	ATG
-recovered pasa_asmbl_42123.p1, internal, 259174, 259263
-recovered pasa_asmbl_42123.p1, internal, 259688, 259837
-recovered pasa_asmbl_42123.p1, internal, 260291, 260419
Valid prediction for snap_scaffold_4-snap.3844-T1
Valid prediction for HiQ_model.g7524.t1
Couldn't classify 250370, 250600
Couldn't classify 251877, 251917
Sorry, prediction pasa_asmbl_42124.p1 fails validation.
(AAT)	 GG	250370-250600	GT	TGG
(GTA)	 AG	251029-251221	GT	AGG
(TGT)	 AG	251877-251917	GA	AGG
-recovered pasa_asmbl_42124.p1, internal, 251029, 251221
Valid prediction for snap_scaffold_4-snap.3848-T1
Valid prediction for GeneMark_model.18818_t
Valid prediction for Augustus_model.g7531.t1
Valid prediction for snap_scaffold_4-snap.3832-T1
Valid prediction for GeneMark_model.18801_t
Valid prediction for Augustus_model.g7527.t1
Valid prediction for GeneMark_model.18800_t
Valid prediction for snap_scaffold_4-snap.3811-T1
Valid prediction for GeneMark_model.18784_t
Valid prediction for GeneMark_model.18881_t
Valid prediction for GeneMark_model.18808_t
Valid prediction for GeneMark_model.18806_t
Valid prediction for GeneMark_model.18796_t
Valid prediction for GeneMark_model.18870_t
Valid prediction for GeneMark_model.18845_t
Valid prediction for GeneMark_model.18879_t
Valid prediction for GeneMark_model.18788_t
Valid prediction for GlimmerHMM_glimmerT_11390-T1
Valid prediction for snap_scaffold_4-snap.3814-T1
Valid prediction for snap_scaffold_4-snap.3795-T1
Valid prediction for CodingQuarry_transcript_49268-T1
Valid prediction for GeneMark_model.18884_t
Valid prediction for snap_scaffold_4-snap.3805-T1
Valid prediction for GeneMark_model.18843_t
Valid prediction for CodingQuarry_transcript_49273-T1
Valid prediction for GeneMark_model.18826_t
Valid prediction for GlimmerHMM_glimmerT_11382-T1
Valid prediction for GlimmerHMM_glimmerT_11406-T1
Valid prediction for CodingQuarry_transcript_49271-T1
Valid prediction for GlimmerHMM_glimmerT_11399-T1
Valid prediction for GeneMark_model.18874_t
Valid prediction for GeneMark_model.18838_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 162360, rend_intergenic: 162357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16129, rend_intergenic: 8865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19085, rend_intergenic: 16361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19433, rend_intergenic: 19122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25729, rend_intergenic: 24863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38327, rend_intergenic: 26019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43454, rend_intergenic: 38537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45046, rend_intergenic: 43800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53902, rend_intergenic: 45157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54922, rend_intergenic: 54154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62437, rend_intergenic: 60514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83923, rend_intergenic: 75085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99503, rend_intergenic: 88814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110144, rend_intergenic: 101925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119265, rend_intergenic: 110729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133960, rend_intergenic: 119794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137163, rend_intergenic: 136270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154144, rend_intergenic: 138212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156906, rend_intergenic: 155713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160507, rend_intergenic: 158556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162906, rend_intergenic: 162357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168012, rend_intergenic: 163460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168824, rend_intergenic: 168409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184842, rend_intergenic: 169240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201014, rend_intergenic: 185005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227694, rend_intergenic: 201250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237533, rend_intergenic: 227807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 241752, rend_intergenic: 237959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246288, rend_intergenic: 243544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250858, rend_intergenic: 247994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257727, rend_intergenic: 250948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 271129, rend_intergenic: 257750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282365, rend_intergenic: 271433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286614, rend_intergenic: 282569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 288765
-exon list size: 1303


building trellis

0.1    
0.2    
0.2    
0.3    
0.4    
0.5    
0.5    
0.6    
0.7    
0.8    
0.8    
0.9    
1.0    
1.1    
1.1    
1.2    
1.3    
1.4    
1.5    
1.5    
1.6    
1.7    
1.8    
1.8    
1.9    
2.0    
2.1    
2.1    
2.2    
2.3    
2.4    
2.5    
2.5    
2.6    
2.7    
2.8    
2.8    
2.9    
3.0    
3.1    
3.1    
3.2    
3.3    
3.4    
3.4    
3.5    
3.6    
3.7    
3.8    
3.8    
3.9    
4.0    
4.1    
4.1    
4.2    
4.3    
4.4    
4.4    
4.5    
4.6    
4.7    
4.8    
4.8    
4.9    
5.0    
5.1    
5.1    
5.2    
5.3    
5.4    
5.4    
5.5    
5.6    
5.7    
5.7    
5.8    
5.9    
6.0    
6.1    
6.1    
6.2    
6.3    
6.4    
6.4    
6.5    
6.6    
6.7    
6.7    
6.8    
6.9    
7.0    
7.0    
7.1    
7.2    
7.3    
7.4    
7.4    
7.5    
7.6    
7.7    
7.7    
7.8    
7.9    
8.0    
8.0    
8.1    
8.2    
8.3    
8.4    
8.4    
8.5    
8.6    
8.7    
8.7    
8.8    
8.9    
9.0    
9.0    
9.1    
9.2    
9.3    
9.3    
9.4    
9.5    
9.6    
9.7    
9.7    
9.8    
9.9    
10.0    
10.0    
10.1    
10.2    
10.3    
10.3    
10.4    
10.5    
10.6    
10.7    
10.7    
10.8    
10.9    
11.0    
11.0    
11.1    
11.2    
11.3    
11.3    
11.4    
11.5    
11.6    
11.6    
11.7    
11.8    
11.9    
12.0    
12.0    
12.1    
12.2    
12.3    
12.3    
12.4    
12.5    
12.6    
12.6    
12.7    
12.8    
12.9    
13.0    
13.0    
13.1    
13.2    
13.3    
13.3    
13.4    
13.5    
13.6    
13.6    
13.7    
13.8    
13.9    
13.9    
14.0    
14.1    
14.2    
14.3    
14.3    
14.4    
14.5    
14.6    
14.6    
14.7    
14.8    
14.9    
14.9    
15.0    
15.1    
15.2    
15.2    
15.3    
15.4    
15.5    
15.6    
15.6    
15.7    
15.8    
15.9    
15.9    
16.0    
16.1    
16.2    
16.2    
16.3    
16.4    
16.5    
16.6    
16.6    
16.7    
16.8    
16.9    
16.9    
17.0    
17.1    
17.2    
17.2    
17.3    
17.4    
17.5    
17.5    
17.6    
17.7    
17.8    
17.9    
17.9    
18.0    
18.1    
18.2    
18.2    
18.3    
18.4    
18.5    
18.5    
18.6    
18.7    
18.8    
18.9    
18.9    
19.0    
19.1    
19.2    
19.2    
19.3    
19.4    
19.5    
19.5    
19.6    
19.7    
19.8    
19.8    
19.9    
20.0    
20.1    
20.2    
20.2    
20.3    
20.4    
20.5    
20.5    
20.6    
20.7    
20.8    
20.8    
20.9    
21.0    
21.1    
21.1    
21.2    
21.3    
21.4    
21.5    
21.5    
21.6    
21.7    
21.8    
21.8    
21.9    
22.0    
22.1    
22.1    
22.2    
22.3    
22.4    
22.5    
22.5    
22.6    
22.7    
22.8    
22.8    
22.9    
23.0    
23.1    
23.1    
23.2    
23.3    
23.4    
23.4    
23.5    
23.6    
23.7    
23.8    
23.8    
23.9    
24.0    
24.1    
24.1    
24.2    
24.3    
24.4    
24.4    
24.5    
24.6    
24.7    
24.8    
24.8    
24.9    
25.0    
25.1    
25.1    
25.2    
25.3    
25.4    
25.4    
25.5    
25.6    
25.7    
25.7    
25.8    
25.9    
26.0    
26.1    
26.1    
26.2    
26.3    
26.4    
26.4    
26.5    
26.6    
26.7    
26.7    
26.8    
26.9    
27.0    
27.0    
27.1    
27.2    
27.3    
27.4    
27.4    
27.5    
27.6    
27.7    
27.7    
27.8    
27.9    
28.0    
28.0    
28.1    
28.2    
28.3    
28.4    
28.4    
28.5    
28.6    
28.7    
28.7    
28.8    
28.9    
29.0    
29.0    
29.1    
29.2    
29.3    
29.3    
29.4    
29.5    
29.6    
29.7    
29.7    
29.8    
29.9    
30.0    
30.0    
30.1    
30.2    
30.3    
30.3    
30.4    
30.5    
30.6    
30.7    
30.7    
30.8    
30.9    
31.0    
31.0    
31.1    
31.2    
31.3    
31.3    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.9    
32.0    
32.0    
32.1    
32.2    
32.3    
32.3    
32.4    
32.5    
32.6    
32.6    
32.7    
32.8    
32.9    
33.0    
33.0    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.6    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.3    
34.4    
34.5    
34.6    
34.6    
34.7    
34.8    
34.9    
34.9    
35.0    
35.1    
35.2    
35.2    
35.3    
35.4    
35.5    
35.6    
35.6    
35.7    
35.8    
35.9    
35.9    
36.0    
36.1    
36.2    
36.2    
36.3    
36.4    
36.5    
36.6    
36.6    
36.7    
36.8    
36.9    
36.9    
37.0    
37.1    
37.2    
37.2    
37.3    
37.4    
37.5    
37.5    
37.6    
37.7    
37.8    
37.9    
37.9    
38.0    
38.1    
38.2    
38.2    
38.3    
38.4    
38.5    
38.5    
38.6    
38.7    
38.8    
38.9    
38.9    
39.0    
39.1    
39.2    
39.2    
39.3    
39.4    
39.5    
39.5    
39.6    
39.7    
39.8    
39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.5    
40.5    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.1    
41.1    
41.2    
41.3    
41.4    
41.5    
41.5    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.1    
42.1    
42.2    
42.3    
42.4    
42.5    
42.5    
42.6    
42.7    
42.8    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.4    
43.5    
43.6    
43.7    
43.8    
43.8    
43.9    
44.0    
44.1    
44.1    
44.2    
44.3    
44.4    
44.4    
44.5    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.1    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.7    
45.8    
45.9    
46.0    
46.1    
46.1    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.7    
46.7    
46.8    
46.9    
47.0    
47.0    
47.1    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.7    
48.7    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.3    
49.3    
49.4    
49.5    
49.6    
49.7    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.3    
50.4    
50.5    
50.6    
50.7    
50.7    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.3    
51.3    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.9    
53.0    
53.0    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.9    
53.9    
54.0    
54.1    
54.2    
54.3    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
54.9    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.5    
55.6    
55.6    
55.7    
55.8    
55.9    
55.9    
56.0    
56.1    
56.2    
56.2    
56.3    
56.4    
56.5    
56.6    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.2    
57.3    
57.4    
57.5    
57.5    
57.6    
57.7    
57.8    
57.9    
57.9    
58.0    
58.1    
58.2    
58.2    
58.3    
58.4    
58.5    
58.5    
58.6    
58.7    
58.8    
58.9    
58.9    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.5    
59.5    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.2    
60.3    
60.4    
60.5    
60.5    
60.6    
60.7    
60.8    
60.8    
60.9    
61.0    
61.1    
61.1    
61.2    
61.3    
61.4    
61.5    
61.5    
61.6    
61.7    
61.8    
61.8    
61.9    
62.0    
62.1    
62.1    
62.2    
62.3    
62.4    
62.5    
62.5    
62.6    
62.7    
62.8    
62.8    
62.9    
63.0    
63.1    
63.1    
63.2    
63.3    
63.4    
63.4    
63.5    
63.6    
63.7    
63.8    
63.8    
63.9    
64.0    
64.1    
64.1    
64.2    
64.3    
64.4    
64.4    
64.5    
64.6    
64.7    
64.8    
64.8    
64.9    
65.0    
65.1    
65.1    
65.2    
65.3    
65.4    
65.4    
65.5    
65.6    
65.7    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.0    
67.1    
67.2    
67.3    
67.4    
67.4    
67.5    
67.6    
67.7    
67.7    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.7    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.3    
69.3    
69.4    
69.5    
69.6    
69.7    
69.7    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.3    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.0    
71.1    
71.2    
71.3    
71.3    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.3    
72.4    
72.5    
72.6    
72.6    
72.7    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.6    
73.7    
73.8    
73.9    
73.9    
74.0    
74.1    
74.2    
74.3    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
74.9    
75.0    
75.1    
75.2    
75.2    
75.3    
75.4    
75.5    
75.6    
75.6    
75.7    
75.8    
75.9    
75.9    
76.0    
76.1    
76.2    
76.2    
76.3    
76.4    
76.5    
76.6    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.2    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.8    
77.9    
77.9    
78.0    
78.1    
78.2    
78.2    
78.3    
78.4    
78.5    
78.5    
78.6    
78.7    
78.8    
78.9    
78.9    
79.0    
79.1    
79.2    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.8    
80.8    
80.9    
81.0    
81.1    
81.1    
81.2    
81.3    
81.4    
81.5    
81.5    
81.6    
81.7    
81.8    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.5    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
83.4    
83.4    
83.5    
83.6    
83.7    
83.8    
83.8    
83.9    
84.0    
84.1    
84.1    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.7    
84.8    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.4    
85.5    
85.6    
85.7    
85.7    
85.8    
85.9    
86.0    
86.1    
86.1    
86.2    
86.3    
86.4    
86.4    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
87.0    
87.0    
87.1    
87.2    
87.3    
87.4    
87.4    
87.5    
87.6    
87.7    
87.7    
87.8    
87.9    
88.0    
88.0    
88.1    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.7    
88.7    
88.8    
88.9    
89.0    
89.0    
89.1    
89.2    
89.3    
89.3    
89.4    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
90.0    
90.0    
90.1    
90.2    
90.3    
90.3    
90.4    
90.5    
90.6    
90.7    
90.7    
90.8    
90.9    
91.0    
91.0    
91.1    
91.2    
91.3    
91.3    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.6    
92.6    
92.7    
92.8    
92.9    
93.0    
93.0    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.6    
93.6    
93.7    
93.8    
93.9    
93.9    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.2    
95.2    
95.3    
95.4    
95.5    
95.6    
95.6    
95.7    
95.8    
95.9    
95.9    
96.0    
96.1    
96.2    
96.2    
96.3    
96.4    
96.5    
96.6    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.5    
97.5    
97.6    
97.7    
97.8    
97.9    
97.9    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.5    
98.5    
98.6    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.2    
99.2    
99.3    
99.4    
99.5    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 74 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 162360, rend_intergenic: 162357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16129, rend_intergenic: 8865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19085, rend_intergenic: 16361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19433, rend_intergenic: 19122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25729, rend_intergenic: 24863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38327, rend_intergenic: 26019  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43454, rend_intergenic: 38537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45046, rend_intergenic: 43800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53902, rend_intergenic: 45157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54922, rend_intergenic: 54154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62437, rend_intergenic: 60514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83923, rend_intergenic: 75085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99503, rend_intergenic: 88814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110144, rend_intergenic: 101925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119265, rend_intergenic: 110729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133960, rend_intergenic: 119794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137163, rend_intergenic: 136270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154144, rend_intergenic: 138212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156906, rend_intergenic: 155713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160507, rend_intergenic: 158556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162906, rend_intergenic: 162357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168012, rend_intergenic: 163460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168824, rend_intergenic: 168409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184842, rend_intergenic: 169240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201014, rend_intergenic: 185005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227694, rend_intergenic: 201250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237533, rend_intergenic: 227807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 241752, rend_intergenic: 237959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246288, rend_intergenic: 243544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 250858, rend_intergenic: 247994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 257727, rend_intergenic: 250948  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 271129, rend_intergenic: 257750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282365, rend_intergenic: 271433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 286614, rend_intergenic: 282569  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support