-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_17709957-17942767

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.3640-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.18556_t
Valid prediction for snap_scaffold_4-snap.3666-T1
Valid prediction for GeneMark_model.18525_t
Valid prediction for GeneMark_model.18523_t
Valid prediction for GeneMark_model.18531_t
Valid prediction for Augustus_model.g7464.t1
Valid prediction for GeneMark_model.18597_t
Valid prediction for GeneMark_model.18592_t
Valid prediction for GeneMark_model.18565_t
Valid prediction for GlimmerHMM_glimmerT_11307-T1
Valid prediction for snap_scaffold_4-snap.3667-T1
Valid prediction for GeneMark_model.18574_t
Valid prediction for GeneMark_model.18540_t
Valid prediction for GlimmerHMM_glimmerT_11312-T1
Valid prediction for snap_scaffold_4-snap.3676-T1
Valid prediction for snap_scaffold_4-snap.3675-T1
Valid prediction for GeneMark_model.18554_t
Valid prediction for Augustus_model.g7463.t1
Valid prediction for GeneMark_model.18601_t
Valid prediction for GeneMark_model.18552_t
Valid prediction for snap_scaffold_4-snap.3663-T1
Valid prediction for snap_scaffold_4-snap.3638-T1
Valid prediction for Augustus_model.g7480.t1
Valid prediction for snap_scaffold_4-snap.3642-T1
Valid prediction for GeneMark_model.18533_t
Valid prediction for snap_scaffold_4-snap.3636-T1
Valid prediction for GeneMark_model.18599_t
Valid prediction for GlimmerHMM_glimmerT_11290-T1
Valid prediction for snap_scaffold_4-snap.3650-T1
Valid prediction for GeneMark_model.18571_t
Valid prediction for GlimmerHMM_glimmerT_11297-T1
Valid prediction for GlimmerHMM_glimmerT_11309-T1
Valid prediction for GeneMark_model.18582_t
Valid prediction for GeneMark_model.18546_t
Valid prediction for snap_scaffold_4-snap.3644-T1
Valid prediction for GeneMark_model.18590_t
Valid prediction for GeneMark_model.18529_t
Valid prediction for snap_scaffold_4-snap.3669-T1
Valid prediction for snap_scaffold_4-snap.3673-T1
Valid prediction for snap_scaffold_4-snap.3660-T1
Valid prediction for GeneMark_model.18544_t
Valid prediction for GlimmerHMM_glimmerT_11298-T1
Valid prediction for snap_scaffold_4-snap.3656-T1
Valid prediction for GeneMark_model.18538_t
Valid prediction for CodingQuarry_transcript_49250-T1
Valid prediction for GlimmerHMM_glimmerT_11295-T1
Valid prediction for GeneMark_model.18603_t
Valid prediction for snap_scaffold_4-snap.3645-T1
Valid prediction for GeneMark_model.18569_t
Valid prediction for snap_scaffold_4-snap.3658-T1
Valid prediction for snap_scaffold_4-snap.3674-T1
Valid prediction for snap_scaffold_4-snap.3670-T1
Valid prediction for snap_scaffold_4-snap.3653-T1
Valid prediction for GeneMark_model.18567_t
Valid prediction for snap_scaffold_4-snap.3647-T1
Valid prediction for GeneMark_model.18595_t
Valid prediction for GeneMark_model.18560_t
Valid prediction for GeneMark_model.18581_t
Valid prediction for snap_scaffold_4-snap.3648-T1
Valid prediction for GeneMark_model.18572_t
Valid prediction for snap_scaffold_4-snap.3665-T1
Valid prediction for GeneMark_model.18558_t
Valid prediction for GeneMark_model.18579_t
Valid prediction for snap_scaffold_4-snap.3680-T1
Valid prediction for GeneMark_model.18536_t
Valid prediction for GlimmerHMM_glimmerT_11311-T1
Valid prediction for GeneMark_model.18577_t
Valid prediction for GeneMark_model.18585_t
Couldn't classify 96279, 96492
Sorry, prediction pasa_asmbl_43414.p1 fails validation.
(ATG)	 TG	90302-90330	GT	GGG
(TCG)	 AG	90756-90933	GT	AGG
(ATT)	 AG	91434-91562	GT	AGG
(ATC)	 AG	92253-92332	GT	GGG
(GGA)	 AG	92698-92750	GT	CAG
(GAG)	 AG	93067-93242	GT	GGG
(ATG)	 AG	93357-93568	GT	AGG
(TCA)	 AG	93931-93991	GT	CAG
(GTC)	 AG	94277-94334	GT	AGG
(GCT)	 AG	95063-95286	GT	AGG
(GCT)	 AG	95503-95646	GT	AGG
(CAT)	 AG	96042-96151	GT	AGG
(TCG)	 AG	96279-96492	CT	GTC
-recovered pasa_asmbl_43414.p1, initial, 90302, 90330
-recovered pasa_asmbl_43414.p1, initial, 93357, 93568
-recovered pasa_asmbl_43414.p1, internal, 90756, 90933
-recovered pasa_asmbl_43414.p1, internal, 91434, 91562
-recovered pasa_asmbl_43414.p1, internal, 92253, 92332
-recovered pasa_asmbl_43414.p1, internal, 92698, 92750
-recovered pasa_asmbl_43414.p1, internal, 93067, 93242
-recovered pasa_asmbl_43414.p1, internal, 93357, 93568
-recovered pasa_asmbl_43414.p1, internal, 93931, 93991
-recovered pasa_asmbl_43414.p1, internal, 94277, 94334
-recovered pasa_asmbl_43414.p1, internal, 95063, 95286
-recovered pasa_asmbl_43414.p1, internal, 95503, 95646
-recovered pasa_asmbl_43414.p1, internal, 96042, 96151
Valid prediction for HiQ_model.g7466.t1
Valid prediction for snap_scaffold_4-snap.3661-T1
Valid prediction for GeneMark_model.18563_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.18534_t
Valid prediction for snap_scaffold_4-snap.3672-T1
Valid prediction for GeneMark_model.18575_t
Valid prediction for snap_scaffold_4-snap.3657-T1
Valid prediction for GlimmerHMM_glimmerT_11289-T1
Couldn't classify 12927, 13029
Sorry, prediction pasa_asmbl_42077.p1 fails validation.
(GAG)	 AG	12927-13029	GT	GGG
(GGG)	 AG	13221-13462	GT	ACG
(CAT)	 AG	13575-13663	GT	AAG
(GAG)	 AG	13826-13943	AG	AAA
-recovered pasa_asmbl_42077.p1, terminal, 13826, 13943
-recovered pasa_asmbl_42077.p1, internal, 12927, 13029
-recovered pasa_asmbl_42077.p1, internal, 13221, 13462
-recovered pasa_asmbl_42077.p1, internal, 13575, 13663
Valid prediction for GeneMark_model.18598_t
Valid prediction for GeneMark_model.18535_t
Couldn't classify 5052, 5117
Couldn't classify 7109, 7157
Sorry, prediction pasa_asmbl_42260.p1 fails validation.
(GAG)	 GG	5052-5117	GT	TGG
(GAT)	 AG	5338-5467	GT	GGG
(GTG)	 AG	6194-6314	GT	GAG
(AGT)	 AG	7109-7157	CA	CCC
add_exon() Sorry, pasa_asmbl_42260.p1 6194-6314-terminal-3 is invalid.
-recovered pasa_asmbl_42260.p1, terminal, 6194, 6314
-recovered pasa_asmbl_42260.p1, internal, 5338, 5467
-recovered pasa_asmbl_42260.p1, internal, 6194, 6314
Valid prediction for GeneMark_model.18594_t
Valid prediction for GlimmerHMM_glimmerT_11301-T1
Valid prediction for snap_scaffold_4-snap.3652-T1
Valid prediction for GeneMark_model.18591_t
Valid prediction for GeneMark_model.18550_t
Valid prediction for Augustus_model.g7478.t1
Valid prediction for Augustus_model.g7469.t1
Couldn't classify 220650, 220709
Couldn't classify 221478, 221690
Sorry, prediction pasa_asmbl_42063.p1 fails validation.
(GCC)	 GA	220650-220709	GT	AGG
(GAG)	 AG	220949-221047	GT	ACG
(GTG)	 AG	221478-221690	GT	AGG
-recovered pasa_asmbl_42063.p1, internal, 220949, 221047
-recovered pasa_asmbl_42063.p1, internal, 221478, 221690
Valid prediction for snap_scaffold_4-snap.3664-T1
Valid prediction for Augustus_model.g7481.t1
Valid prediction for snap_scaffold_4-snap.3649-T1
Valid prediction for GeneMark_model.18587_t
Valid prediction for GeneMark_model.18545_t
Couldn't classify 806, 831
Couldn't classify 2794, 2835
Sorry, prediction pasa_asmbl_42078.p1 fails validation.
(GCT)	 AG	806-831	GT	GAG
(GAT)	 AG	1711-1914	GT	CAG
(GTC)	 AG	2309-2478	GT	CCG
(TGG)	 AG	2646-2689	GT	CAG
(TTT)	 AG	2794-2835	GT	ACG
-recovered pasa_asmbl_42078.p1, internal, 806, 831
-recovered pasa_asmbl_42078.p1, internal, 1711, 1914
-recovered pasa_asmbl_42078.p1, internal, 2309, 2478
-recovered pasa_asmbl_42078.p1, internal, 2646, 2689
-recovered pasa_asmbl_42078.p1, internal, 2794, 2835
Couldn't classify 210677, 210781
Sorry, prediction GeneMark_model.18532_t fails validation.
(GGG)	 AG	210677-210781	GT	AGG
(CCC)	 AG	211264-211272	GT	GGG
(GGG)	 AG	211768-211990	GG	GAG
-recovered GeneMark_model.18532_t, terminal, 211768, 211990
-recovered GeneMark_model.18532_t, internal, 210677, 210781
-recovered GeneMark_model.18532_t, internal, 211264, 211272
Valid prediction for Augustus_model.g7476.t1
Valid prediction for GeneMark_model.18602_t
Valid prediction for GlimmerHMM_glimmerT_11304-T1
Couldn't classify 222369, 222443
Couldn't classify 225763, 225948
Sorry, prediction pasa_asmbl_42062.p1 fails validation.
(GAA)	 AT	222369-222443	GT	AGG
(GAG)	 AG	225058-225146	GT	AAG
(GAC)	 AG	225348-225471	GT	AGG
(GTG)	 AG	225763-225948	GA	AGG
-recovered pasa_asmbl_42062.p1, internal, 225058, 225146
-recovered pasa_asmbl_42062.p1, internal, 225348, 225471
Valid prediction for Augustus_model.g7472.t1
Valid prediction for snap_scaffold_4-snap.3668-T1
Valid prediction for GeneMark_model.18547_t
Valid prediction for GeneMark_model.18586_t
Valid prediction for GlimmerHMM_glimmerT_11305-T1
Couldn't classify 213635, 213795
Couldn't classify 215845, 215967
Sorry, prediction pasa_asmbl_42064.p1 fails validation.
(ATC)	 AG	213635-213795	GT	AGG
(GGC)	 AG	214216-214324	GT	AGG
(GTG)	 AG	214571-214702	GT	AGG
(CTG)	 AG	215058-215264	GT	AGG
(GAC)	 AG	215407-215544	GT	AGG
(GAG)	 AG	215845-215967	GG	AAG
-recovered pasa_asmbl_42064.p1, internal, 213635, 213795
-recovered pasa_asmbl_42064.p1, internal, 214216, 214324
-recovered pasa_asmbl_42064.p1, internal, 214571, 214702
-recovered pasa_asmbl_42064.p1, internal, 215058, 215264
-recovered pasa_asmbl_42064.p1, internal, 215407, 215544
Valid prediction for GlimmerHMM_glimmerT_11314-T1
Valid prediction for GeneMark_model.18561_t
Valid prediction for Augustus_model.g7473.t1
Valid prediction for GlimmerHMM_glimmerT_11302-T1
Valid prediction for GeneMark_model.18562_t
Valid prediction for GlimmerHMM_glimmerT_11291-T1
Valid prediction for Augustus_model.g7462.t1
Valid prediction for GeneMark_model.18589_t
Valid prediction for GlimmerHMM_glimmerT_11296-T1
Valid prediction for GeneMark_model.18543_t
Valid prediction for snap_scaffold_4-snap.3651-T1
Valid prediction for Augustus_model.g7468.t1
Valid prediction for GeneMark_model.18578_t
Valid prediction for GlimmerHMM_glimmerT_11310-T1
Valid prediction for GeneMark_model.18542_t
Valid prediction for GeneMark_model.18551_t
Valid prediction for snap_scaffold_4-snap.3646-T1
Valid prediction for GeneMark_model.18549_t
Valid prediction for snap_scaffold_4-snap.3662-T1
Valid prediction for Augustus_model.g7460.t1
Valid prediction for CodingQuarry_transcript_49251-T1
Valid prediction for GeneMark_model.18557_t
Valid prediction for GlimmerHMM_glimmerT_11306-T1
Valid prediction for GlimmerHMM_glimmerT_11299-T1
Valid prediction for GlimmerHMM_glimmerT_11294-T1
Valid prediction for snap_scaffold_4-snap.3643-T1
Valid prediction for GlimmerHMM_glimmerT_11300-T1
Valid prediction for GeneMark_model.18564_t
Valid prediction for GeneMark_model.18573_t
Valid prediction for GeneMark_model.18570_t
Valid prediction for GeneMark_model.18568_t
Valid prediction for GeneMark_model.18596_t
Couldn't classify 58539, 58669
Couldn't classify 59671, 59766
Sorry, prediction pasa_asmbl_42068.p1 fails validation.
(GGC)	 TG	58539-58669	GT	AGG
(GTT)	 AG	59118-59196	GT	GGG
(ACC)	 AG	59671-59766	GA	GGG
-recovered pasa_asmbl_42068.p1, internal, 59118, 59196
Valid prediction for GeneMark_model.18530_t
Valid prediction for GeneMark_model.18555_t
Valid prediction for GeneMark_model.18584_t
Valid prediction for snap_scaffold_4-snap.3671-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.3679-T1
Valid prediction for GlimmerHMM_glimmerT_11303-T1
Valid prediction for snap_scaffold_4-snap.3677-T1
Valid prediction for GeneMark_model.18600_t
Valid prediction for GeneMark_model.18576_t
Valid prediction for GlimmerHMM_glimmerT_11288-T1
Valid prediction for snap_scaffold_4-snap.3654-T1
Valid prediction for snap_scaffold_4-snap.3659-T1
Valid prediction for GeneMark_model.18524_t
Couldn't classify 35214, 35308
Sorry, prediction pasa_asmbl_42075.p2 fails validation.
(ATG)	 TC	30279-30344	GT	CTG
(CGG)	 AG	32509-32596	GT	ATG
(ATG)	 AG	33373-33439	GT	AGG
(GGG)	 AG	33807-33923	GT	CAG
(ACT)	 AG	34866-35032	GT	CTG
(TTC)	 AG	35214-35308	GT	AGG
-recovered pasa_asmbl_42075.p2, initial, 30279, 30344
add_exon() Sorry, pasa_asmbl_42075.p2 33373-33439-initial-1 is invalid.
-recovered pasa_asmbl_42075.p2, initial, 33373, 33439
-recovered pasa_asmbl_42075.p2, internal, 32509, 32596
-recovered pasa_asmbl_42075.p2, internal, 33373, 33439
-recovered pasa_asmbl_42075.p2, internal, 33807, 33923
-recovered pasa_asmbl_42075.p2, internal, 34866, 35032
-recovered pasa_asmbl_42075.p2, internal, 35214, 35308
Valid prediction for GeneMark_model.18528_t
Valid prediction for Augustus_model.g7471.t1
Valid prediction for GeneMark_model.18539_t
Valid prediction for snap_scaffold_4-snap.3639-T1
Valid prediction for GlimmerHMM_glimmerT_11293-T1
Valid prediction for snap_scaffold_4-snap.3641-T1
Valid prediction for GeneMark_model.18548_t
Valid prediction for Augustus_model.g7465.t1
Valid prediction for snap_scaffold_4-snap.3637-T1
Valid prediction for GeneMark_model.18580_t
Valid prediction for Augustus_model.g7461.t1
Valid prediction for GeneMark_model.18553_t
Valid prediction for GeneMark_model.18526_t
Couldn't classify 75126, 75154
Sorry, prediction pasa_asmbl_42067.p1 fails validation.
(GCC)	 GA	75126-75154	GT	AGG
(GTC)	 AG	75502-75568	GT	AGG
(GTG)	 AG	75839-75953	GT	AGG
(GAA)	 AG	76479-76585	AT	AAA
add_exon() Sorry, pasa_asmbl_42067.p1 75839-75953-terminal-3 is invalid.
-recovered pasa_asmbl_42067.p1, terminal, 75839, 75953
-recovered pasa_asmbl_42067.p1, terminal, 76479, 76585
-recovered pasa_asmbl_42067.p1, internal, 75502, 75568
-recovered pasa_asmbl_42067.p1, internal, 75839, 75953
Valid prediction for GeneMark_model.18537_t
Valid prediction for snap_scaffold_4-snap.3681-T1
Valid prediction for GlimmerHMM_glimmerT_11292-T1
Valid prediction for GeneMark_model.18559_t
Valid prediction for snap_scaffold_4-snap.3655-T1
Valid prediction for Augustus_model.g7477.t1
Valid prediction for Augustus_model.g7475.t1
Valid prediction for Augustus_model.g7474.t1
Valid prediction for GeneMark_model.18583_t
Valid prediction for GlimmerHMM_glimmerT_11313-T1
Valid prediction for GeneMark_model.18566_t
Valid prediction for Augustus_model.g7479.t1
Valid prediction for Augustus_model.g7467.t1
Valid prediction for GeneMark_model.18593_t
Valid prediction for snap_scaffold_4-snap.3678-T1
Couldn't classify 36454, 36537
Sorry, prediction pasa_asmbl_42074.p1 fails validation.
(GAG)	 CA	36454-36537	GT	AGG
(ACT)	 AG	36728-36807	GT	AGG
(GGC)	 AG	37208-37307	GT	GGG
(AGA)	 AG	37715-37897	CC	GAC
-recovered pasa_asmbl_42074.p1, terminal, 37715, 37897
-recovered pasa_asmbl_42074.p1, internal, 36728, 36807
-recovered pasa_asmbl_42074.p1, internal, 37208, 37307
Valid prediction for Augustus_model.g7470.t1
Valid prediction for GeneMark_model.18541_t
Valid prediction for GlimmerHMM_glimmerT_11308-T1
Valid prediction for GeneMark_model.18604_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3973, rend_intergenic: 2664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4997, rend_intergenic: 4467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17916, rend_intergenic: 5162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20920, rend_intergenic: 18114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32990, rend_intergenic: 23657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42275, rend_intergenic: 33162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45455, rend_intergenic: 42313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56931, rend_intergenic: 51970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83037, rend_intergenic: 80717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88080, rend_intergenic: 85574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92908, rend_intergenic: 90727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98100, rend_intergenic: 94552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114926, rend_intergenic: 108815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123740, rend_intergenic: 117515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135613, rend_intergenic: 123861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142221, rend_intergenic: 139572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142572, rend_intergenic: 142263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152207, rend_intergenic: 142809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162307, rend_intergenic: 155195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170729, rend_intergenic: 166600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182128, rend_intergenic: 172546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210485, rend_intergenic: 186316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227575, rend_intergenic: 218237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228423, rend_intergenic: 227837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231194, rend_intergenic: 228482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 232811
-exon list size: 1122


building trellis

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23.1    
23.2    
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23.8    
23.8    
23.9    
24.0    
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24.2    
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24.6    
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24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
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25.8    
25.9    
26.0    
26.1    
26.2    
26.2    
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26.8    
26.9    
27.0    
27.0    
27.1    
27.2    
27.3    
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27.6    
27.7    
27.8    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
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28.5    
28.6    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.6    
99.7    
99.8    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 3973, rend_intergenic: 2664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 4997, rend_intergenic: 4467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17916, rend_intergenic: 5162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20920, rend_intergenic: 18114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32990, rend_intergenic: 23657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42275, rend_intergenic: 33162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45455, rend_intergenic: 42313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56931, rend_intergenic: 51970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83037, rend_intergenic: 80717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88080, rend_intergenic: 85574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92908, rend_intergenic: 90727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98100, rend_intergenic: 94552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114926, rend_intergenic: 108815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123740, rend_intergenic: 117515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135613, rend_intergenic: 123861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142221, rend_intergenic: 139572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142572, rend_intergenic: 142263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152207, rend_intergenic: 142809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162307, rend_intergenic: 155195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170729, rend_intergenic: 166600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182128, rend_intergenic: 172546  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 210485, rend_intergenic: 186316  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227575, rend_intergenic: 218237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228423, rend_intergenic: 227837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231194, rend_intergenic: 228482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support