-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_17295429-17544066 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.18460_t Valid prediction for snap_scaffold_4-snap.3580-T1 Valid prediction for snap_scaffold_4-snap.3574-T1 Valid prediction for GeneMark_model.18405_t Valid prediction for GeneMark_model.18420_t Valid prediction for GeneMark_model.18426_t Valid prediction for GeneMark_model.18470_t Valid prediction for GlimmerHMM_glimmerT_11238-T1 Valid prediction for GeneMark_model.18451_t Valid prediction for snap_scaffold_4-snap.3555-T1 Valid prediction for CodingQuarry_transcript_49230-T1 Valid prediction for GlimmerHMM_glimmerT_11265-T1 Valid prediction for Augustus_model.g7437.t1 Valid prediction for GeneMark_model.18434_t Valid prediction for snap_scaffold_4-snap.3569-T1 Valid prediction for snap_scaffold_4-snap.3571-T1 Valid prediction for snap_scaffold_4-snap.3568-T1 Valid prediction for snap_scaffold_4-snap.3585-T1 Valid prediction for snap_scaffold_4-snap.3545-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for HiQ_model.g7439.t1 Valid prediction for HiQ_model.g7438.t1 Valid prediction for GeneMark_model.18475_t Valid prediction for pasa_asmbl_43392.p1 Valid prediction for GeneMark_model.18477_t Valid prediction for snap_scaffold_4-snap.3551-T1 Valid prediction for snap_scaffold_4-snap.3556-T1 Valid prediction for snap_scaffold_4-snap.3597-T1 Valid prediction for snap_scaffold_4-snap.3553-T1 Valid prediction for GlimmerHMM_glimmerT_11237-T1 Valid prediction for snap_scaffold_4-snap.3587-T1 Valid prediction for GeneMark_model.18459_t Valid prediction for GeneMark_model.18418_t Valid prediction for GeneMark_model.18409_t Valid prediction for GlimmerHMM_glimmerT_11233-T1 Valid prediction for GeneMark_model.18448_t Valid prediction for GlimmerHMM_glimmerT_11263-T1 Valid prediction for snap_scaffold_4-snap.3591-T1 Valid prediction for GlimmerHMM_glimmerT_11248-T1 Valid prediction for GeneMark_model.18462_t Valid prediction for snap_scaffold_4-snap.3595-T1 Valid prediction for snap_scaffold_4-snap.3557-T1 Valid prediction for Augustus_model.g7422.t1 Valid prediction for snap_scaffold_4-snap.3572-T1 Valid prediction for GlimmerHMM_glimmerT_11234-T1 Valid prediction for GeneMark_model.18471_t Valid prediction for GlimmerHMM_glimmerT_11239-T1 Valid prediction for GeneMark_model.18413_t Valid prediction for snap_scaffold_4-snap.3592-T1 Valid prediction for GeneMark_model.18453_t Valid prediction for GeneMark_model.18464_t Valid prediction for GeneMark_model.18439_t Valid prediction for GeneMark_model.18411_t Valid prediction for snap_scaffold_4-snap.3578-T1 Valid prediction for GlimmerHMM_glimmerT_11249-T1 Valid prediction for GeneMark_model.18407_t Valid prediction for GlimmerHMM_glimmerT_11266-T1 Valid prediction for Augustus_model.g7426.t1 Valid prediction for CodingQuarry_transcript_49225-T1 Valid prediction for GlimmerHMM_glimmerT_11253-T1 Valid prediction for snap_scaffold_4-snap.3558-T1 Valid prediction for GeneMark_model.18473_t Valid prediction for CodingQuarry_transcript_49231-T1 Valid prediction for GeneMark_model.18466_t Valid prediction for snap_scaffold_4-snap.3559-T1 Valid prediction for GeneMark_model.18441_t Valid prediction for GeneMark_model.18415_t Valid prediction for GlimmerHMM_glimmerT_11258-T1 Valid prediction for GeneMark_model.18432_t Valid prediction for HiQ_model.g7434.t1 Valid prediction for snap_scaffold_4-snap.3594-T1 Valid prediction for GeneMark_model.18478_t Valid prediction for snap_scaffold_4-snap.3566-T1 Valid prediction for GlimmerHMM_glimmerT_11240-T1 Valid prediction for GlimmerHMM_glimmerT_11245-T1 Valid prediction for snap_scaffold_4-snap.3575-T1 Valid prediction for GeneMark_model.18468_t Valid prediction for snap_scaffold_4-snap.3549-T1 Valid prediction for GeneMark_model.18443_t Valid prediction for GeneMark_model.18445_t Valid prediction for GeneMark_model.18424_t Couldn't classify 49557, 49738 Sorry, prediction GeneMark_model.18422_t fails validation. (CAG) AG 49557-49738 GT GGG (AGA) AG 49762-49812 GT GGG (GGA) AG 49834-49848 GT GGG (GGT) AG 49878-50012 GT GGG (AGG) AG 50040-50072 GT GGG (AGA) AG 50094-50108 GT GGG (GGA) AG 51300-51574 GT AGG (GGA) AG 51592-51613 GT GGG (GCT) AG 51646-51738 GT GGG (GAG) AG 51774-51788 GT GAG (GGA) AG 51812-51817 GT AGG (GCC) AG 51846-51887 GT GGG (AAG) AG 51917-51928 GT GGG (GGA) AG 51959-52192 GT AAG (AGC) AG 52283-52319 GT CTG (ACG) AG 52369-52465 GT GCG (CCC) AG 52989-53131 GT AGG (GAC) AG 53161-53216 GT GAG (AGG) AG 53244-53339 GT GAG (AGA) AG 53370-53378 GT GAG (GCA) AG 53406-53435 GT AGG (GGA) AG 53458-53499 GT AAG (GCA) AG 53564-53604 GT AGG (GAC) AG 53709-53715 GT AGG (GAG) AG 53754-53855 GT AGG (CAG) AG 53881-54070 GT GCG (TTC) AG 54093-54142 GT AGG (TCC) AG 54164-54238 GT GGG (AGA) AG 54323-54337 GT GAG (AGA) AG 54396-54404 GT CTG (AGA) AG 54427-54471 GT ATG (GGG) AG 54612-54683 GT CTG (GGA) AG 54797-54922 GT AGG (AGA) AG 54955-54969 GT GAG (AGG) AG 54993-55028 GT AGG (AGG) AG 55062-55101 AG GAA -recovered GeneMark_model.18422_t, terminal, 55062, 55101 -recovered GeneMark_model.18422_t, internal, 49557, 49738 -recovered GeneMark_model.18422_t, internal, 49762, 49812 -recovered GeneMark_model.18422_t, internal, 49834, 49848 -recovered GeneMark_model.18422_t, internal, 49878, 50012 -recovered GeneMark_model.18422_t, internal, 50040, 50072 -recovered GeneMark_model.18422_t, internal, 50094, 50108 -recovered GeneMark_model.18422_t, internal, 51300, 51574 -recovered GeneMark_model.18422_t, internal, 51592, 51613 -recovered GeneMark_model.18422_t, internal, 51646, 51738 -recovered GeneMark_model.18422_t, internal, 51774, 51788 -recovered GeneMark_model.18422_t, internal, 51812, 51817 -recovered GeneMark_model.18422_t, internal, 51846, 51887 -recovered GeneMark_model.18422_t, internal, 51917, 51928 -recovered GeneMark_model.18422_t, internal, 51959, 52192 -recovered GeneMark_model.18422_t, internal, 52283, 52319 -recovered GeneMark_model.18422_t, internal, 52369, 52465 -recovered GeneMark_model.18422_t, internal, 52989, 53131 -recovered GeneMark_model.18422_t, internal, 53161, 53216 -recovered GeneMark_model.18422_t, internal, 53244, 53339 -recovered GeneMark_model.18422_t, internal, 53370, 53378 -recovered GeneMark_model.18422_t, internal, 53406, 53435 -recovered GeneMark_model.18422_t, internal, 53458, 53499 -recovered GeneMark_model.18422_t, internal, 53564, 53604 -recovered GeneMark_model.18422_t, internal, 53709, 53715 -recovered GeneMark_model.18422_t, internal, 53754, 53855 -recovered GeneMark_model.18422_t, internal, 53881, 54070 -recovered GeneMark_model.18422_t, internal, 54093, 54142 -recovered GeneMark_model.18422_t, internal, 54164, 54238 -recovered GeneMark_model.18422_t, internal, 54323, 54337 -recovered GeneMark_model.18422_t, internal, 54396, 54404 -recovered GeneMark_model.18422_t, internal, 54427, 54471 -recovered GeneMark_model.18422_t, internal, 54612, 54683 -recovered GeneMark_model.18422_t, internal, 54797, 54922 -recovered GeneMark_model.18422_t, internal, 54955, 54969 -recovered GeneMark_model.18422_t, internal, 54993, 55028 Valid prediction for GeneMark_model.18427_t Valid prediction for GeneMark_model.18417_t Valid prediction for snap_scaffold_4-snap.3552-T1 Valid prediction for snap_scaffold_4-snap.3547-T1 Valid prediction for GeneMark_model.18450_t Valid prediction for GeneMark_model.18455_t Valid prediction for snap_scaffold_4-snap.3599-T1 Valid prediction for snap_scaffold_4-snap.3589-T1 Valid prediction for GeneMark_model.18437_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.3550-T1 Valid prediction for GlimmerHMM_glimmerT_11241-T1 Valid prediction for snap_scaffold_4-snap.3590-T1 Valid prediction for snap_scaffold_4-snap.3560-T1 Valid prediction for snap_scaffold_4-snap.3581-T1 Valid prediction for GeneMark_model.18461_t Valid prediction for GeneMark_model.18444_t Valid prediction for Augustus_model.g7432.t1 Valid prediction for snap_scaffold_4-snap.3598-T1 Couldn't classify 120137, 120664 Sorry, prediction pasa_asmbl_42012.p1 fails validation. (ACC) GT 120137-120664 GT AGG (TCG) AG 120842-120937 GT AGG (GTC) AG 121141-121278 GT AGG (ATG) AG 121857-121944 GT GGG (AGT) AG 122094-122524 AG GAA -recovered pasa_asmbl_42012.p1, initial, 121857, 121944 -recovered pasa_asmbl_42012.p1, terminal, 122094, 122524 -recovered pasa_asmbl_42012.p1, internal, 120842, 120937 -recovered pasa_asmbl_42012.p1, internal, 121141, 121278 -recovered pasa_asmbl_42012.p1, internal, 121857, 121944 Valid prediction for GeneMark_model.18447_t Valid prediction for GeneMark_model.18408_t Valid prediction for Augustus_model.g7431.t1 Valid prediction for Augustus_model.g7424.t1 Valid prediction for snap_scaffold_4-snap.3582-T1 Valid prediction for GeneMark_model.18456_t Couldn't classify 50164, 50496 Sorry, prediction pasa_asmbl_42026.p1 fails validation. (ATG) AC 48512-48514 GT TGG (AAC) AG 49183-49330 GT AGG (AGG) AG 49610-49800 GT TTG (ACC) AG 50164-50496 AA ATA -recovered pasa_asmbl_42026.p1, initial, 48512, 48514 -recovered pasa_asmbl_42026.p1, internal, 49183, 49330 -recovered pasa_asmbl_42026.p1, internal, 49610, 49800 Valid prediction for snap_scaffold_4-snap.3586-T1 Valid prediction for snap_scaffold_4-snap.3561-T1 Valid prediction for GeneMark_model.18410_t Valid prediction for CodingQuarry_transcript_49229-T1 Valid prediction for CodingQuarry_transcript_49227-T1 Couldn't classify 71775, 74336 Sorry, prediction pasa_asmbl_42018.p1 fails validation. (GTG) GG 71775-74336 GC AAG Valid prediction for Augustus_model.g7430.t1 Valid prediction for GlimmerHMM_glimmerT_11256-T1 Valid prediction for GeneMark_model.18431_t Valid prediction for snap_scaffold_4-snap.3573-T1 Valid prediction for snap_scaffold_4-snap.3548-T1 Valid prediction for pasa_asmbl_42016.p1 Valid prediction for Augustus_model.g7421.t1 Valid prediction for GeneMark_model.18465_t Valid prediction for snap_scaffold_4-snap.3546-T1 Valid prediction for GlimmerHMM_glimmerT_11252-T1 Valid prediction for GeneMark_model.18423_t Valid prediction for GeneMark_model.18472_t Valid prediction for GlimmerHMM_glimmerT_11264-T1 Valid prediction for GlimmerHMM_glimmerT_11250-T1 Couldn't classify 89307, 89457 Couldn't classify 90093, 90268 Sorry, prediction pasa_asmbl_42391.p1 fails validation. (CCA) CT 89307-89457 GT AGG (GTC) AG 90093-90268 GA ATG Couldn't classify 119559, 119700 Sorry, prediction pasa_asmbl_42013.p1 fails validation. (ATG) TC 110905-110959 GT AGG (TCT) AG 113436-113489 GT TGG (GGT) AG 113915-113970 GT TGG (CGT) AG 114460-114526 GT AGG (TCA) AG 116297-116422 GT CCG (ACC) AG 116713-116909 GT AGG (CCT) AG 117078-117218 GT AGG (ACA) AG 118098-118263 GT AGG (GGG) AG 118641-118836 GT AGG (CGG) AG 119559-119700 AG TGA -recovered pasa_asmbl_42013.p1, initial, 110905, 110959 -recovered pasa_asmbl_42013.p1, internal, 113436, 113489 -recovered pasa_asmbl_42013.p1, internal, 113915, 113970 -recovered pasa_asmbl_42013.p1, internal, 114460, 114526 -recovered pasa_asmbl_42013.p1, internal, 116297, 116422 -recovered pasa_asmbl_42013.p1, internal, 116713, 116909 -recovered pasa_asmbl_42013.p1, internal, 117078, 117218 -recovered pasa_asmbl_42013.p1, internal, 118098, 118263 -recovered pasa_asmbl_42013.p1, internal, 118641, 118836 Valid prediction for Augustus_model.g7423.t1 Valid prediction for snap_scaffold_4-snap.3596-T1 Valid prediction for GeneMark_model.18428_t Valid prediction for CodingQuarry_transcript_49226-T1 Valid prediction for snap_scaffold_4-snap.3584-T1 Valid prediction for snap_scaffold_4-snap.3577-T1 Valid prediction for snap_scaffold_4-snap.3583-T1 Valid prediction for GlimmerHMM_glimmerT_11236-T1 Valid prediction for GeneMark_model.18416_t Valid prediction for snap_scaffold_4-snap.3544-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_11251-T1 Valid prediction for GeneMark_model.18463_t Valid prediction for Augustus_model.g7435.t1 Valid prediction for GeneMark_model.18440_t Valid prediction for GeneMark_model.18449_t Valid prediction for snap_scaffold_4-snap.3567-T1 Valid prediction for GlimmerHMM_glimmerT_11247-T1 Valid prediction for GeneMark_model.18433_t Valid prediction for GeneMark_model.18430_t Valid prediction for snap_scaffold_4-snap.3579-T1 Valid prediction for snap_scaffold_4-snap.3576-T1 Valid prediction for GeneMark_model.18436_t Valid prediction for GlimmerHMM_glimmerT_11235-T1 Valid prediction for pasa_asmbl_42028.p1 Valid prediction for GlimmerHMM_glimmerT_11244-T1 Valid prediction for GlimmerHMM_glimmerT_11260-T1 Valid prediction for GeneMark_model.18425_t Valid prediction for snap_scaffold_4-snap.3565-T1 Valid prediction for CodingQuarry_transcript_49228-T1 Valid prediction for GeneMark_model.18406_t Valid prediction for snap_scaffold_4-snap.3563-T1 Valid prediction for GeneMark_model.18438_t Valid prediction for pasa_asmbl_42031.p1 Valid prediction for GeneMark_model.18474_t Valid prediction for HiQ_model.g7433.t1 Couldn't classify 94388, 94488 Sorry, prediction pasa_asmbl_42342.p1 fails validation. (CCC) CC 94388-94488 GT GGG (ACA) AG 94983-95059 GT GAG (AGA) AG 95626-95808 GT AGG (CTC) AG 95933-96130 GT TGG (AAC) AG 96350-96432 TG GAT -recovered pasa_asmbl_42342.p1, terminal, 96350, 96432 -recovered pasa_asmbl_42342.p1, internal, 94983, 95059 -recovered pasa_asmbl_42342.p1, internal, 95626, 95808 -recovered pasa_asmbl_42342.p1, internal, 95933, 96130 Valid prediction for snap_scaffold_4-snap.3570-T1 Valid prediction for GlimmerHMM_glimmerT_11257-T1 Valid prediction for Augustus_model.g7429.t1 Valid prediction for GeneMark_model.18435_t Valid prediction for Augustus_model.g7427.t1 Valid prediction for snap_scaffold_4-snap.3554-T1 Valid prediction for GlimmerHMM_glimmerT_11262-T1 Valid prediction for GlimmerHMM_glimmerT_11232-T1 Valid prediction for GeneMark_model.18469_t Valid prediction for GeneMark_model.18442_t Valid prediction for snap_scaffold_4-snap.3593-T1 Couldn't classify 207433, 207498 Sorry, prediction GeneMark_model.18421_t fails validation. (CCC) AG 207433-207498 GT CCG (TCT) AG 207957-208162 GT CGG (GGA) AG 208183-208263 GT AGG (GGC) AG 208290-208381 GT GGG (TGG) AG 208433-208444 GT GGG (GAG) AG 208478-208489 GT GAG (TGG) AG 208513-208551 GT TGG (TGA) AG 208580-208588 GT TGG (GGG) AG 208613-208675 GT TGG (TGG) AG 208700-208711 GT GAG (GGG) AG 208734-208745 GT GGG (TGA) AG 208850-208882 GT GGG (GGG) AG 208931-208949 AG AAA add_exon() Sorry, GeneMark_model.18421_t 208700-208711-terminal-1 is invalid. -recovered GeneMark_model.18421_t, terminal, 208700, 208711 -recovered GeneMark_model.18421_t, terminal, 208931, 208949 -recovered GeneMark_model.18421_t, internal, 207433, 207498 -recovered GeneMark_model.18421_t, internal, 207957, 208162 -recovered GeneMark_model.18421_t, internal, 208183, 208263 -recovered GeneMark_model.18421_t, internal, 208290, 208381 -recovered GeneMark_model.18421_t, internal, 208433, 208444 -recovered GeneMark_model.18421_t, internal, 208478, 208489 -recovered GeneMark_model.18421_t, internal, 208513, 208551 -recovered GeneMark_model.18421_t, internal, 208580, 208588 -recovered GeneMark_model.18421_t, internal, 208613, 208675 -recovered GeneMark_model.18421_t, internal, 208700, 208711 -recovered GeneMark_model.18421_t, internal, 208734, 208745 -recovered GeneMark_model.18421_t, internal, 208850, 208882 Valid prediction for GlimmerHMM_glimmerT_11246-T1 Valid prediction for GeneMark_model.18412_t Valid prediction for GeneMark_model.18476_t Valid prediction for GeneMark_model.18419_t Valid prediction for GeneMark_model.18467_t Valid prediction for Augustus_model.g7425.t1 Valid prediction for GeneMark_model.18446_t Valid prediction for GlimmerHMM_glimmerT_11254-T1 Couldn't classify 70644, 71396 Sorry, prediction pasa_asmbl_42019.p1 fails validation. (TTC) GG 70644-71396 AG CCA Valid prediction for GlimmerHMM_glimmerT_11255-T1 Valid prediction for snap_scaffold_4-snap.3588-T1 Valid prediction for GlimmerHMM_glimmerT_11243-T1 Valid prediction for Augustus_model.g7420.t1 Valid prediction for GlimmerHMM_glimmerT_11259-T1 Valid prediction for GlimmerHMM_glimmerT_11242-T1 Valid prediction for GeneMark_model.18452_t Valid prediction for snap_scaffold_4-snap.3564-T1 Valid prediction for snap_scaffold_4-snap.3562-T1 Valid prediction for GeneMark_model.18429_t Valid prediction for CodingQuarry_transcript_49224-T1 Valid prediction for GeneMark_model.18458_t Valid prediction for GeneMark_model.18457_t Valid prediction for GeneMark_model.18454_t Valid prediction for Augustus_model.g7428.t1 Valid prediction for HiQ_model.g7436.t1 Valid prediction for GlimmerHMM_glimmerT_11261-T1 Valid prediction for GeneMark_model.18414_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7417, rend_intergenic: 4385 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19034, rend_intergenic: 8119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23561, rend_intergenic: 20147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32826, rend_intergenic: 26087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59977, rend_intergenic: 34009 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87074, rend_intergenic: 62282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108938, rend_intergenic: 87239 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118663, rend_intergenic: 111360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126580, rend_intergenic: 123090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134185, rend_intergenic: 126587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143451, rend_intergenic: 138907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157102, rend_intergenic: 151870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162047, rend_intergenic: 158408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222311, rend_intergenic: 213075 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232091, rend_intergenic: 226709 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236283, rend_intergenic: 235152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 239578, rend_intergenic: 237979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 240867, rend_intergenic: 240300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242436, rend_intergenic: 241014 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 248638 -exon list size: 1111 building trellis 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 -found 45 predictions from path traversal Error with prediction: snap lend_intergenic: 7417, rend_intergenic: 4385 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19034, rend_intergenic: 8119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23561, rend_intergenic: 20147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32826, rend_intergenic: 26087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59977, rend_intergenic: 34009 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87074, rend_intergenic: 62282 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108938, rend_intergenic: 87239 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118663, rend_intergenic: 111360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126580, rend_intergenic: 123090 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134185, rend_intergenic: 126587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143451, rend_intergenic: 138907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157102, rend_intergenic: 151870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162047, rend_intergenic: 158408 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222311, rend_intergenic: 213075 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232091, rend_intergenic: 226709 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236283, rend_intergenic: 235152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 239578, rend_intergenic: 237979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 240867, rend_intergenic: 240300 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242436, rend_intergenic: 241014 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support