-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_16948321-17121636

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.3484-T1
Valid prediction for GlimmerHMM_glimmerT_11199-T1
Valid prediction for GeneMark_model.18307_t
Valid prediction for GeneMark_model.18325_t
Valid prediction for CodingQuarry_transcript_49203-T1
Valid prediction for GeneMark_model.18284_t
Valid prediction for GlimmerHMM_glimmerT_11197-T1
Valid prediction for GeneMark_model.18319_t
Valid prediction for GeneMark_model.18282_t
Valid prediction for GeneMark_model.18292_t
Valid prediction for snap_scaffold_4-snap.3475-T1
Valid prediction for Augustus_model.g7393.t1
Valid prediction for GlimmerHMM_glimmerT_11194-T1
Valid prediction for Augustus_model.g7400.t1
Valid prediction for GlimmerHMM_glimmerT_11186-T1
Valid prediction for GeneMark_model.18333_t
Valid prediction for GeneMark_model.18286_t
Valid prediction for snap_scaffold_4-snap.3491-T1
Valid prediction for pasa_asmbl_43370.p1
Valid prediction for GeneMark_model.18341_t
Valid prediction for GlimmerHMM_glimmerT_11182-T1
Valid prediction for GeneMark_model.18315_t
Valid prediction for GlimmerHMM_glimmerT_11201-T1
Valid prediction for snap_scaffold_4-snap.3488-T1
Valid prediction for GeneMark_model.18339_t
Valid prediction for GeneMark_model.18313_t
Couldn't classify 117266, 118051
Sorry, prediction pasa_asmbl_43368.p1 fails validation.
(AGT)	 CC	117266-118051	GG	AGG
Valid prediction for GeneMark_model.18311_t
Valid prediction for pasa_asmbl_43605.p1
Valid prediction for CodingQuarry_transcript_49209-T1
Valid prediction for GeneMark_model.18317_t
Valid prediction for GeneMark_model.18302_t
Couldn't classify 113140, 113169
Couldn't classify 113361, 113729
Sorry, prediction pasa_asmbl_43367.p2 fails validation.
(AAA)	 GC	113140-113169	GT	AGG
(GTT)	 AG	113361-113729	GC	AGG
-recovered pasa_asmbl_43367.p2, internal, 113361, 113729
Valid prediction for CodingQuarry_transcript_49210-T1
Valid prediction for snap_scaffold_4-snap.3460-T1
Valid prediction for snap_scaffold_4-snap.3496-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_4-snap.3489-T1
Valid prediction for GlimmerHMM_glimmerT_11205-T1
Valid prediction for GeneMark_model.18289_t
Valid prediction for GeneMark_model.18310_t
Valid prediction for snap_scaffold_4-snap.3486-T1
Valid prediction for HiQ_model.g7387.t1
Valid prediction for GeneMark_model.18295_t
Valid prediction for Augustus_model.g7397.t1
Valid prediction for GlimmerHMM_glimmerT_11180-T1
Valid prediction for CodingQuarry_transcript_49205-T1
Valid prediction for GlimmerHMM_glimmerT_11193-T1
Couldn't classify 83651, 84205
Sorry, prediction pasa_asmbl_43365.p1 fails validation.
(GTG)	 GG	83651-84205	GT	AGG
(TCA)	 AG	84368-84509	GT	AGG
(ACA)	 AG	84624-84802	AC	AAA
-recovered pasa_asmbl_43365.p1, terminal, 84624, 84802
-recovered pasa_asmbl_43365.p1, internal, 84368, 84509
Valid prediction for HiQ_model.g7396.t1
Valid prediction for snap_scaffold_4-snap.3492-T1
Valid prediction for GeneMark_model.18287_t
Valid prediction for GlimmerHMM_glimmerT_11181-T1
Valid prediction for snap_scaffold_4-snap.3467-T1
Valid prediction for snap_scaffold_4-snap.3466-T1
Valid prediction for GeneMark_model.18308_t
Valid prediction for GeneMark_model.18335_t
Couldn't classify 77883, 78024
Sorry, prediction pasa_asmbl_43359.p1 fails validation.
(ATC)	 TC	77883-78024	GT	AGG
(TTC)	 AG	78273-78539	GT	AGG
(GTG)	 AG	78779-79014	GT	AGG
(ATT)	 AG	79771-79935	GC	AGG
(GAC)	 AG	80911-81109	GT	AGG
(CGC)	 AG	81590-81888	GT	AGG
(GAG)	 AG	82096-82257	GT	GGG
(GAT)	 AG	82753-82793	GT	AAG
(CTC)	 AG	83017-83174	GT	GGG
(CTC)	 AG	83322-83434	GT	AGG
(ACC)	 AG	83533-83827	GT	AGG
(ACG)	 AG	84042-84205	GT	AGG
(TCA)	 AG	84368-84509	GT	AGG
(ACA)	 AG	84624-84802	AC	AAA
-recovered pasa_asmbl_43359.p1, terminal, 84624, 84802
-recovered pasa_asmbl_43359.p1, internal, 78273, 78539
-recovered pasa_asmbl_43359.p1, internal, 78779, 79014
-recovered pasa_asmbl_43359.p1, internal, 79771, 79935
-recovered pasa_asmbl_43359.p1, internal, 80911, 81109
-recovered pasa_asmbl_43359.p1, internal, 81590, 81888
-recovered pasa_asmbl_43359.p1, internal, 82096, 82257
-recovered pasa_asmbl_43359.p1, internal, 82753, 82793
-recovered pasa_asmbl_43359.p1, internal, 83017, 83174
-recovered pasa_asmbl_43359.p1, internal, 83322, 83434
-recovered pasa_asmbl_43359.p1, internal, 83533, 83827
-recovered pasa_asmbl_43359.p1, internal, 84042, 84205
-recovered pasa_asmbl_43359.p1, internal, 84368, 84509
Couldn't classify 171351, 171766
Sorry, prediction pasa_asmbl_43373.p1 fails validation.
(ATG)	 CC	163390-163458	GT	AGG
(GTT)	 AG	164515-164673	GT	AGG
(GCT)	 AG	164950-165078	GT	AGG
(GGG)	 AG	166043-166163	GT	TGG
(CCT)	 AG	166652-166809	GT	AGG
(GAG)	 AG	168527-168607	GT	AGG
(AGT)	 AG	169189-169456	GT	AGG
(CTG)	 AG	170357-170521	GT	AGG
(GAG)	 AG	170929-171168	GT	AGG
(GCT)	 AG	171351-171766	AT	GGA
-recovered pasa_asmbl_43373.p1, initial, 163390, 163458
-recovered pasa_asmbl_43373.p1, internal, 164515, 164673
-recovered pasa_asmbl_43373.p1, internal, 164950, 165078
-recovered pasa_asmbl_43373.p1, internal, 166043, 166163
-recovered pasa_asmbl_43373.p1, internal, 166652, 166809
-recovered pasa_asmbl_43373.p1, internal, 168527, 168607
-recovered pasa_asmbl_43373.p1, internal, 169189, 169456
-recovered pasa_asmbl_43373.p1, internal, 170357, 170521
-recovered pasa_asmbl_43373.p1, internal, 170929, 171168
Valid prediction for snap_scaffold_4-snap.3464-T1
Valid prediction for GeneMark_model.18290_t
Valid prediction for CodingQuarry_transcript_49212-T1
Valid prediction for GeneMark_model.18323_t
Valid prediction for GeneMark_model.18300_t
Valid prediction for GlimmerHMM_glimmerT_11200-T1
Valid prediction for Augustus_model.g7394.t1
Valid prediction for CodingQuarry_transcript_49211-T1
Valid prediction for Augustus_model.g7386.t1
Valid prediction for GlimmerHMM_glimmerT_11198-T1
Valid prediction for GeneMark_model.18329_t
Valid prediction for snap_scaffold_4-snap.3478-T1
Valid prediction for Augustus_model.g7395.t1
Valid prediction for GeneMark_model.18304_t
Valid prediction for GlimmerHMM_glimmerT_11184-T1
Valid prediction for snap_scaffold_4-snap.3468-T1
Valid prediction for snap_scaffold_4-snap.3473-T1
Valid prediction for snap_scaffold_4-snap.3480-T1
Valid prediction for snap_scaffold_4-snap.3499-T1
Valid prediction for GeneMark_model.18298_t
Valid prediction for snap_scaffold_4-snap.3458-T1
Valid prediction for GeneMark_model.18331_t
Valid prediction for snap_scaffold_4-snap.3471-T1
Couldn't classify 3865, 3983
Sorry, prediction CodingQuarry_transcript_49202-T1 fails validation.
(ATG)	 AG	2985-3074	GT	CCG
(ATC)	 AG	3279-3357	GT	AGG
(GTG)	 CA	3865-3983	GT	AGG
(GAA)	 AG	4285-4350	GA	GAG
-recovered CodingQuarry_transcript_49202-T1, initial, 2985, 3074
-recovered CodingQuarry_transcript_49202-T1, terminal, 4285, 4350
-recovered CodingQuarry_transcript_49202-T1, internal, 2985, 3074
-recovered CodingQuarry_transcript_49202-T1, internal, 3279, 3357
Valid prediction for GlimmerHMM_glimmerT_11195-T1
Valid prediction for snap_scaffold_4-snap.3462-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.18330_t
Valid prediction for snap_scaffold_4-snap.3476-T1
Valid prediction for snap_scaffold_4-snap.3477-T1
Valid prediction for GeneMark_model.18320_t
Valid prediction for GlimmerHMM_glimmerT_11183-T1
Valid prediction for GlimmerHMM_glimmerT_11196-T1
Valid prediction for GeneMark_model.18301_t
Valid prediction for snap_scaffold_4-snap.3498-T1
Valid prediction for CodingQuarry_transcript_49206-T1
Valid prediction for GeneMark_model.18294_t
Valid prediction for snap_scaffold_4-snap.3470-T1
Valid prediction for GlimmerHMM_glimmerT_11202-T1
Valid prediction for GeneMark_model.18336_t
Valid prediction for GeneMark_model.18283_t
Valid prediction for GeneMark_model.18296_t
Valid prediction for snap_scaffold_4-snap.3494-T1
Valid prediction for GlimmerHMM_glimmerT_11187-T1
Valid prediction for GeneMark_model.18314_t
Valid prediction for GlimmerHMM_glimmerT_11204-T1
Valid prediction for snap_scaffold_4-snap.3500-T1
Valid prediction for GeneMark_model.18281_t
Valid prediction for snap_scaffold_4-snap.3472-T1
Valid prediction for GeneMark_model.18324_t
Valid prediction for GeneMark_model.18297_t
Valid prediction for GeneMark_model.18332_t
Couldn't classify 149129, 149275
Couldn't classify 149834, 149983
Sorry, prediction pasa_asmbl_42245.p1 fails validation.
(CTC)	 AT	149129-149275	GT	TGG
(GGC)	 AG	149834-149983	GT	AAG
-recovered pasa_asmbl_42245.p1, internal, 149834, 149983
Valid prediction for GeneMark_model.18285_t
Valid prediction for snap_scaffold_4-snap.3495-T1
Valid prediction for snap_scaffold_4-snap.3459-T1
Valid prediction for GlimmerHMM_glimmerT_11188-T1
Valid prediction for GeneMark_model.18318_t
Valid prediction for snap_scaffold_4-snap.3497-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for pasa_asmbl_42000.p1
Valid prediction for GeneMark_model.18305_t
Valid prediction for snap_scaffold_4-snap.3474-T1
Valid prediction for Augustus_model.g7391.t1
Valid prediction for GlimmerHMM_glimmerT_11185-T1
Valid prediction for GlimmerHMM_glimmerT_11189-T1
Valid prediction for GlimmerHMM_glimmerT_11191-T1
Valid prediction for GeneMark_model.18291_t
Valid prediction for GeneMark_model.18312_t
Valid prediction for GeneMark_model.18309_t
Valid prediction for Augustus_model.g7389.t1
Valid prediction for snap_scaffold_4-snap.3463-T1
Valid prediction for GeneMark_model.18306_t
Valid prediction for snap_scaffold_4-snap.3487-T1
Valid prediction for snap_scaffold_4-snap.3493-T1
Valid prediction for snap_scaffold_4-snap.3483-T1
Sorry, intron length (8) is less than minimum required (10)
Couldn't classify 109219, 109323
Couldn't classify 110704, 110761
Sorry, prediction pasa_asmbl_42281.p1 fails validation.
(CCT)	 AG	109219-109323	GT	AGG
(AAA)	 AG	110155-110315	GT	AGG
(GCG)	 AG	110704-110761	CT	GGC
-recovered pasa_asmbl_42281.p1, internal, 109219, 109323
-recovered pasa_asmbl_42281.p1, internal, 110155, 110315
Valid prediction for snap_scaffold_4-snap.3490-T1
Valid prediction for GeneMark_model.18303_t
Valid prediction for GlimmerHMM_glimmerT_11192-T1
Valid prediction for HiQ_model.g7398.t1
Valid prediction for snap_scaffold_4-snap.3461-T1
Valid prediction for GeneMark_model.18326_t
Valid prediction for GeneMark_model.18337_t
Valid prediction for snap_scaffold_4-snap.3469-T1
Valid prediction for snap_scaffold_4-snap.3481-T1
Valid prediction for GeneMark_model.18340_t
Valid prediction for CodingQuarry_transcript_49208-T1
Valid prediction for HiQ_model.g7399.t1
Valid prediction for snap_scaffold_4-snap.3485-T1
Valid prediction for GeneMark_model.18316_t
Valid prediction for GeneMark_model.18288_t
Valid prediction for Augustus_model.g7388.t1
Valid prediction for pasa_asmbl_41992.p1
Valid prediction for CodingQuarry_transcript_49204-T1
Valid prediction for GeneMark_model.18338_t
Valid prediction for Augustus_model.g7390.t1
Valid prediction for snap_scaffold_4-snap.3465-T1
Valid prediction for GlimmerHMM_glimmerT_11203-T1
Valid prediction for GeneMark_model.18293_t
Valid prediction for GeneMark_model.18327_t
Valid prediction for GlimmerHMM_glimmerT_11190-T1
Valid prediction for HiQ_model.g7392.t1
Valid prediction for snap_scaffold_4-snap.3479-T1
Valid prediction for snap_scaffold_4-snap.3482-T1
Valid prediction for GeneMark_model.18322_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9462, rend_intergenic: 8460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14236, rend_intergenic: 12082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17834, rend_intergenic: 15208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36620, rend_intergenic: 20350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41677, rend_intergenic: 37717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47489, rend_intergenic: 46432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50859, rend_intergenic: 48009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56245, rend_intergenic: 53790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60502, rend_intergenic: 59032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84802, rend_intergenic: 77574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104054, rend_intergenic: 86487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107132, rend_intergenic: 105501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109858, rend_intergenic: 108232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117099, rend_intergenic: 112364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121847, rend_intergenic: 120723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128252, rend_intergenic: 122164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142640, rend_intergenic: 131246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145475, rend_intergenic: 143188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151468, rend_intergenic: 145679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171835, rend_intergenic: 168016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173316
-exon list size: 803


building trellis

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48.9    
49.1    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.2    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.1    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.2    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.1    
79.3    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.3    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 9462, rend_intergenic: 8460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14236, rend_intergenic: 12082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17834, rend_intergenic: 15208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36620, rend_intergenic: 20350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41677, rend_intergenic: 37717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47489, rend_intergenic: 46432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50859, rend_intergenic: 48009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56245, rend_intergenic: 53790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60502, rend_intergenic: 59032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84802, rend_intergenic: 77574  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104054, rend_intergenic: 86487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107132, rend_intergenic: 105501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109858, rend_intergenic: 108232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117099, rend_intergenic: 112364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121847, rend_intergenic: 120723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128252, rend_intergenic: 122164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142640, rend_intergenic: 131246  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145475, rend_intergenic: 143188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151468, rend_intergenic: 145679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171835, rend_intergenic: 168016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support