-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_12739981-13097476

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2709-T1
Couldn't classify 127799, 127849
Couldn't classify 132186, 132328
Sorry, prediction pasa_asmbl_43100.p1 fails validation.
(GGG)	 GA	127799-127849	GT	AGG
(ATC)	 AG	128694-128767	GT	AGG
(GAT)	 AG	129388-129462	GT	GGG
(GTT)	 AG	131209-131294	GT	TGG
(ATA)	 AG	131976-132065	GT	AGG
(GCT)	 AG	132186-132328	TA	ACT
-recovered pasa_asmbl_43100.p1, internal, 128694, 128767
-recovered pasa_asmbl_43100.p1, internal, 129388, 129462
-recovered pasa_asmbl_43100.p1, internal, 131209, 131294
-recovered pasa_asmbl_43100.p1, internal, 131976, 132065
Valid prediction for snap_scaffold_4-snap.2715-T1
Valid prediction for pasa_asmbl_43080.p1
Valid prediction for GeneMark_model.17383_t
Valid prediction for snap_scaffold_4-snap.2723-T1
Valid prediction for GeneMark_model.17381_t
Valid prediction for Augustus_model.g6994.t1
Valid prediction for HiQ_model.g7000.t1
Valid prediction for HiQ_model.g7007.t1
Valid prediction for snap_scaffold_4-snap.2732-T1
Valid prediction for HiQ_model.g6993.t1
Valid prediction for GeneMark_model.17393_t
Valid prediction for CodingQuarry_transcript_49060-T1
Valid prediction for snap_scaffold_4-snap.2718-T1
Valid prediction for GlimmerHMM_glimmerT_10664-T1
Valid prediction for GeneMark_model.17352_t
Valid prediction for GlimmerHMM_glimmerT_10661-T1
Valid prediction for GeneMark_model.17363_t
Valid prediction for GeneMark_model.17368_t
Valid prediction for snap_scaffold_4-snap.2707-T1
Couldn't classify 103367, 103471
Couldn't classify 107986, 108091
Sorry, prediction pasa_asmbl_43511.p1 fails validation.
(GAG)	 CA	103367-103471	GT	GGG
(GTG)	 AG	103586-103681	GT	AGG
(GTG)	 AG	104894-104964	GC	AAG
(GAA)	 AG	105048-105109	GT	TGG
(GTA)	 AG	105206-105285	GT	AGG
(CTG)	 AG	105908-106042	GT	CGG
(GTG)	 AG	106683-106799	GT	TGG
(ATG)	 AG	107592-107674	GT	AGG
(GCC)	 AG	107986-108091	GT	ACG
-recovered pasa_asmbl_43511.p1, initial, 107592, 107674
-recovered pasa_asmbl_43511.p1, internal, 103586, 103681
-recovered pasa_asmbl_43511.p1, internal, 104894, 104964
-recovered pasa_asmbl_43511.p1, internal, 105048, 105109
-recovered pasa_asmbl_43511.p1, internal, 105206, 105285
-recovered pasa_asmbl_43511.p1, internal, 105908, 106042
-recovered pasa_asmbl_43511.p1, internal, 106683, 106799
-recovered pasa_asmbl_43511.p1, internal, 107592, 107674
-recovered pasa_asmbl_43511.p1, internal, 107986, 108091
Valid prediction for snap_scaffold_4-snap.2739-T1
Couldn't classify 125564, 125635
Couldn't classify 127441, 127491
Sorry, prediction pasa_asmbl_43611.p1 fails validation.
(GTG)	 CA	125564-125635	GT	CAG
(AAT)	 AG	126075-126192	GT	ATG
(TCT)	 AG	126374-126462	GT	AGG
(GTG)	 AG	126788-126904	GT	CGG
(CTT)	 AG	127441-127491	CT	CCC
-recovered pasa_asmbl_43611.p1, internal, 126075, 126192
-recovered pasa_asmbl_43611.p1, internal, 126374, 126462
-recovered pasa_asmbl_43611.p1, internal, 126788, 126904
Valid prediction for GeneMark_model.17379_t
Valid prediction for HiQ_model.g6996.t1
Valid prediction for snap_scaffold_4-snap.2733-T1
Valid prediction for CodingQuarry_transcript_49064-T1
Valid prediction for snap_scaffold_4-snap.2722-T1
Valid prediction for Augustus_model.g7014.t1
Valid prediction for GlimmerHMM_glimmerT_10669-T1
Valid prediction for snap_scaffold_4-snap.2735-T1
Valid prediction for GeneMark_model.17378_t
Valid prediction for GeneMark_model.17370_t
Valid prediction for snap_scaffold_4-snap.2730-T1
Valid prediction for GeneMark_model.17388_t
Valid prediction for GeneMark_model.17355_t
Valid prediction for Augustus_model.g7005.t1
Valid prediction for GlimmerHMM_glimmerT_10687-T1
Valid prediction for GeneMark_model.17375_t
Valid prediction for GlimmerHMM_glimmerT_10660-T1
Valid prediction for GlimmerHMM_glimmerT_10671-T1
Valid prediction for GlimmerHMM_glimmerT_10681-T1
Valid prediction for GeneMark_model.17358_t
Valid prediction for GeneMark_model.17353_t
Valid prediction for HiQ_model.g6995.t1
Valid prediction for snap_scaffold_4-snap.2716-T1
Valid prediction for CodingQuarry_transcript_49063-T1
Valid prediction for snap_scaffold_4-snap.2706-T1
Valid prediction for snap_scaffold_4-snap.2737-T1
Couldn't classify 1748, 1822
Sorry, prediction pasa_asmbl_43078.p1 fails validation.
(TGG)	 TG	1748-1822	GT	AGG
(GTG)	 AG	2380-2583	GT	AGG
(ATT)	 AG	2682-2914	GT	AGG
(TAA)	 AG	3268-3436	GT	AGG
(GCA)	 AG	3541-3597	GT	TTG
(CTC)	 AG	3786-4040	GT	AGG
(ACG)	 AG	4183-4416	GT	AGG
(GAG)	 AG	4806-4997	GT	ATG
(GGT)	 AG	5290-5400	GT	AGG
(GTG)	 AG	5478-5593	GT	AGG
(TGT)	 AG	5724-5934	GT	AAG
(GCC)	 AG	6077-6175	GT	AGG
(GAG)	 AG	6501-6653	GT	AGG
(GTG)	 AG	6767-6907	GT	GGG
(GCC)	 AG	6991-7153	GT	TGG
(GCA)	 AG	7477-7595	GT	AGG
(ATG)	 AG	7871-7938	GT	CAG
(GTA)	 AG	8048-8210	GT	AGG
(TGG)	 AG	8709-8870	GT	AGG
(GCA)	 AG	9000-9173	GT	AGG
(GTC)	 AG	9479-9607	AC	GAA
-recovered pasa_asmbl_43078.p1, initial, 7871, 7938
-recovered pasa_asmbl_43078.p1, terminal, 9479, 9607
-recovered pasa_asmbl_43078.p1, internal, 2380, 2583
-recovered pasa_asmbl_43078.p1, internal, 2682, 2914
-recovered pasa_asmbl_43078.p1, internal, 3268, 3436
-recovered pasa_asmbl_43078.p1, internal, 3541, 3597
-recovered pasa_asmbl_43078.p1, internal, 3786, 4040
-recovered pasa_asmbl_43078.p1, internal, 4183, 4416
-recovered pasa_asmbl_43078.p1, internal, 4806, 4997
-recovered pasa_asmbl_43078.p1, internal, 5290, 5400
-recovered pasa_asmbl_43078.p1, internal, 5478, 5593
-recovered pasa_asmbl_43078.p1, internal, 5724, 5934
-recovered pasa_asmbl_43078.p1, internal, 6077, 6175
-recovered pasa_asmbl_43078.p1, internal, 6501, 6653
-recovered pasa_asmbl_43078.p1, internal, 6767, 6907
-recovered pasa_asmbl_43078.p1, internal, 6991, 7153
-recovered pasa_asmbl_43078.p1, internal, 7477, 7595
-recovered pasa_asmbl_43078.p1, internal, 7871, 7938
-recovered pasa_asmbl_43078.p1, internal, 8048, 8210
-recovered pasa_asmbl_43078.p1, internal, 8709, 8870
-recovered pasa_asmbl_43078.p1, internal, 9000, 9173
Valid prediction for GeneMark_model.17369_t
Valid prediction for snap_scaffold_4-snap.2738-T1
Valid prediction for CodingQuarry_transcript_49061-T1
Valid prediction for snap_scaffold_4-snap.2740-T1
Valid prediction for Augustus_model.g7001.t1
Valid prediction for GeneMark_model.17384_t
Valid prediction for snap_scaffold_4-snap.2726-T1
Valid prediction for Augustus_model.g7027.t1
Valid prediction for snap_scaffold_4-snap.2725-T1
Valid prediction for CodingQuarry_transcript_49065-T1
Valid prediction for GlimmerHMM_glimmerT_10677-T1
Valid prediction for snap_scaffold_4-snap.2712-T1
Valid prediction for GeneMark_model.17361_t
Valid prediction for Augustus_model.g7002.t1
Valid prediction for pasa_asmbl_43091.p1
Valid prediction for HiQ_model.g7023.t1
Valid prediction for snap_scaffold_4-snap.2734-T1
Valid prediction for GeneMark_model.17365_t
Valid prediction for GlimmerHMM_glimmerT_10666-T1
Couldn't classify 162997, 163051
Couldn't classify 166428, 166604
Sorry, prediction pasa_asmbl_43103.p1 fails validation.
(TAC)	 CG	162997-163051	GT	AGG
(AAG)	 AG	164358-164426	GT	AGG
(GCT)	 AG	164544-164612	GT	AGG
(GTG)	 AG	164723-164892	GT	AGG
(GTG)	 AG	166204-166305	GT	AGG
(GTG)	 AG	166428-166604	CC	GGC
-recovered pasa_asmbl_43103.p1, internal, 164358, 164426
-recovered pasa_asmbl_43103.p1, internal, 164544, 164612
-recovered pasa_asmbl_43103.p1, internal, 164723, 164892
-recovered pasa_asmbl_43103.p1, internal, 166204, 166305
Valid prediction for snap_scaffold_4-snap.2704-T1
Valid prediction for snap_scaffold_4-snap.2714-T1
Valid prediction for snap_scaffold_4-snap.2705-T1
Valid prediction for GeneMark_model.17371_t
Valid prediction for Augustus_model.g7015.t1
Valid prediction for Augustus_model.g7008.t1
Couldn't classify 215981, 216050
Sorry, prediction pasa_asmbl_43106.p1 fails validation.
(GGA)	 AT	215981-216050	GT	CAG
(TGG)	 AG	216221-216316	GT	AGG
(CTG)	 AG	216401-216496	GT	CGG
(CTG)	 AG	216634-216729	GT	AAG
(GTG)	 AG	216840-216935	GT	ACG
(CTG)	 AG	217034-217129	GT	ACG
(CTA)	 AG	217228-217325	GT	AGG
(GCA)	 AG	217426-217440	CC	GAC
-recovered pasa_asmbl_43106.p1, terminal, 217426, 217440
-recovered pasa_asmbl_43106.p1, internal, 216221, 216316
-recovered pasa_asmbl_43106.p1, internal, 216401, 216496
-recovered pasa_asmbl_43106.p1, internal, 216634, 216729
-recovered pasa_asmbl_43106.p1, internal, 216840, 216935
-recovered pasa_asmbl_43106.p1, internal, 217034, 217129
-recovered pasa_asmbl_43106.p1, internal, 217228, 217325
Valid prediction for pasa_asmbl_43086.p1
Valid prediction for pasa_asmbl_43089.p1
Valid prediction for Augustus_model.g7017.t1
Valid prediction for GlimmerHMM_glimmerT_10673-T1
Valid prediction for Augustus_model.g7011.t1
Valid prediction for HiQ_model.g7021.t1
Valid prediction for GlimmerHMM_glimmerT_10662-T1
Valid prediction for snap_scaffold_4-snap.2736-T1
Valid prediction for GeneMark_model.17348_t
Valid prediction for GlimmerHMM_glimmerT_10670-T1
Valid prediction for GlimmerHMM_glimmerT_10686-T1
Valid prediction for GeneMark_model.17382_t
Valid prediction for GlimmerHMM_glimmerT_10672-T1
Valid prediction for snap_scaffold_4-snap.2713-T1
Valid prediction for snap_scaffold_4-snap.2719-T1
Valid prediction for GlimmerHMM_glimmerT_10689-T1
Valid prediction for CodingQuarry_transcript_49059-T1
Couldn't classify 68787, 68927
Sorry, prediction pasa_asmbl_43092.p1 fails validation.
(ATG)	 GC	67751-67959	GT	AGG
(GGT)	 AG	68194-68470	GT	GGG
(GCA)	 AG	68787-68927	TA	CCT
-recovered pasa_asmbl_43092.p1, initial, 67751, 67959
-recovered pasa_asmbl_43092.p1, internal, 68194, 68470
Valid prediction for CodingQuarry_transcript_49066-T1
Valid prediction for snap_scaffold_4-snap.2708-T1
Valid prediction for GeneMark_model.17380_t
Valid prediction for GlimmerHMM_glimmerT_10665-T1
Valid prediction for snap_scaffold_4-snap.2746-T1
Valid prediction for GlimmerHMM_glimmerT_10682-T1
Valid prediction for snap_scaffold_4-snap.2745-T1
Valid prediction for CodingQuarry_transcript_49071-T1
Valid prediction for snap_scaffold_4-snap.2721-T1
Couldn't classify 97956, 98088
Sorry, prediction pasa_asmbl_43097.p1 fails validation.
(ATG)	 AA	96084-96194	GT	AGG
(GCC)	 AG	97693-97823	GT	CAG
(TTT)	 AG	97956-98088	GT	GGG
-recovered pasa_asmbl_43097.p1, initial, 96084, 96194
-recovered pasa_asmbl_43097.p1, internal, 97693, 97823
-recovered pasa_asmbl_43097.p1, internal, 97956, 98088
Valid prediction for Augustus_model.g7003.t1
Valid prediction for GeneMark_model.17377_t
Valid prediction for HiQ_model.g6998.t1
Valid prediction for Augustus_model.g7016.t1
Valid prediction for snap_scaffold_4-snap.2729-T1
Valid prediction for Augustus_model.g7004.t1
Valid prediction for Augustus_model.g6997.t1
Valid prediction for HiQ_model.g7025.t1
Valid prediction for snap_scaffold_4-snap.2731-T1
Valid prediction for snap_scaffold_4-snap.2711-T1
Valid prediction for snap_scaffold_4-snap.2750-T1
Valid prediction for GeneMark_model.17357_t
Valid prediction for GlimmerHMM_glimmerT_10663-T1
Couldn't classify 4806, 4864
Couldn't classify 4947, 4989
Sorry, prediction CodingQuarry_transcript_49058-T1 fails validation.
(ATG)	 AA	2386-2583	GT	AGG
(ATT)	 AG	2682-2914	GT	AGG
(TAA)	 AG	3268-3436	GT	AGG
(GCA)	 AG	3541-3597	GT	TTG
(CTC)	 AG	3786-4040	GT	AGG
(ACG)	 AG	4183-4416	GT	AGG
(GAG)	 AG	4806-4864	GA	GTG
(GAG)	 GG	4947-4989	TG	AAT
-recovered CodingQuarry_transcript_49058-T1, initial, 2386, 2583
-recovered CodingQuarry_transcript_49058-T1, internal, 2682, 2914
-recovered CodingQuarry_transcript_49058-T1, internal, 3268, 3436
-recovered CodingQuarry_transcript_49058-T1, internal, 3541, 3597
-recovered CodingQuarry_transcript_49058-T1, internal, 3786, 4040
-recovered CodingQuarry_transcript_49058-T1, internal, 4183, 4416
Valid prediction for GeneMark_model.17356_t
Valid prediction for snap_scaffold_4-snap.2744-T1
Valid prediction for pasa_asmbl_43079.p2
Couldn't classify 92579, 92755
Sorry, prediction pasa_asmbl_43096.p1 fails validation.
(TCA)	 TT	92579-92755	GT	AAG
(GTG)	 AG	94538-94756	TG	GAT
-recovered pasa_asmbl_43096.p1, terminal, 94538, 94756
Couldn't classify 214851, 214935
Couldn't classify 215005, 215264
Sorry, prediction pasa_asmbl_43105.p1 fails validation.
(CAT)	 CC	214851-214935	GT	TGG
(GGC)	 AG	215005-215264	GA	AGG
Valid prediction for CodingQuarry_transcript_49062-T1
Valid prediction for GeneMark_model.17350_t
Valid prediction for snap_scaffold_4-snap.2710-T1
Valid prediction for GeneMark_model.17349_t
Valid prediction for pasa_asmbl_43546.p1
Valid prediction for pasa_asmbl_43081.p1
Valid prediction for HiQ_model.g7022.t1
Valid prediction for GeneMark_model.17389_t
Valid prediction for GlimmerHMM_glimmerT_10667-T1
Valid prediction for snap_scaffold_4-snap.2751-T1
Valid prediction for GlimmerHMM_glimmerT_10659-T1
Valid prediction for GlimmerHMM_glimmerT_10680-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.17392_t
Valid prediction for GeneMark_model.17387_t
Valid prediction for HiQ_model.g7013.t1
Valid prediction for Augustus_model.g7018.t1
Valid prediction for Augustus_model.g7006.t1
Valid prediction for GeneMark_model.17376_t
Couldn't classify 301050, 301130
Sorry, prediction pasa_asmbl_41702.p1 fails validation.
(TAC)	 AG	301050-301130	GT	AGG
(TTT)	 AG	301370-301483	GT	CTG
(AAT)	 AG	301584-301694	GT	AGG
(GTC)	 AG	301788-301862	CT	GAC
-recovered pasa_asmbl_41702.p1, terminal, 301788, 301862
-recovered pasa_asmbl_41702.p1, internal, 301050, 301130
-recovered pasa_asmbl_41702.p1, internal, 301370, 301483
-recovered pasa_asmbl_41702.p1, internal, 301584, 301694
Valid prediction for HiQ_model.g7024.t1
Valid prediction for GeneMark_model.17374_t
Valid prediction for pasa_asmbl_41707.p1
Couldn't classify 10393, 10398
Sorry, prediction CodingQuarry_transcript_49074-T1 fails validation.
(ATG)	 TA	10393-10398	GA	GTG
(CAG)	 AG	12303-12405	GT	GGG
(GTG)	 AG	13782-13888	GT	AGG
(GTA)	 AG	14467-14567	GT	TGG
(CTG)	 AG	14670-14804	GT	GGG
(GCT)	 AG	15712-15829	GT	AGG
(ATC)	 AG	16149-16241	GT	AGG
(GAC)	 AG	16430-16526	GT	AGG
(TTG)	 AG	16694-16745	GT	AGG
(AAC)	 AG	16871-16999	GT	AAG
(AAG)	 AG	18291-18426	GT	AGG
(CTT)	 AG	19202-19344	GT	AGG
(AAC)	 AG	19470-19509	GA	AAG
-recovered CodingQuarry_transcript_49074-T1, terminal, 19470, 19509
-recovered CodingQuarry_transcript_49074-T1, internal, 12303, 12405
-recovered CodingQuarry_transcript_49074-T1, internal, 13782, 13888
-recovered CodingQuarry_transcript_49074-T1, internal, 14467, 14567
-recovered CodingQuarry_transcript_49074-T1, internal, 14670, 14804
-recovered CodingQuarry_transcript_49074-T1, internal, 15712, 15829
-recovered CodingQuarry_transcript_49074-T1, internal, 16149, 16241
-recovered CodingQuarry_transcript_49074-T1, internal, 16430, 16526
-recovered CodingQuarry_transcript_49074-T1, internal, 16694, 16745
-recovered CodingQuarry_transcript_49074-T1, internal, 16871, 16999
-recovered CodingQuarry_transcript_49074-T1, internal, 18291, 18426
-recovered CodingQuarry_transcript_49074-T1, internal, 19202, 19344
Valid prediction for GeneMark_model.17351_t
Valid prediction for GlimmerHMM_glimmerT_10675-T1
Valid prediction for GeneMark_model.17354_t
Valid prediction for Augustus_model.g7009.t1
Valid prediction for snap_scaffold_4-snap.2749-T1
Valid prediction for GlimmerHMM_glimmerT_10678-T1
Valid prediction for CodingQuarry_transcript_49069-T1
Valid prediction for snap_scaffold_4-snap.2727-T1
Couldn't classify 40907, 41389
Couldn't classify 41751, 41847
Couldn't classify 44773, 44902
Sorry, prediction CodingQuarry_transcript_49070-T1 fails validation.
(ATG)	 CA	39972-40793	GT	AGG
(GTG)	 AG	40907-41389	AT	ATA
(ATG)	 TC	41751-41847	GT	AGG
(GTA)	 AG	42004-42258	GT	GGG
(GGG)	 AG	42699-42868	GT	TGG
(TAT)	 AG	43000-43065	GT	AGG
(CTG)	 AG	43244-43402	GT	AGG
(GGG)	 AG	43499-43651	GC	AGG
(GTG)	 AG	43944-44148	GT	AGG
(GCA)	 AT	44773-44902	GT	AGG
(AGA)	 AG	45055-45145	AG	AGA
-recovered CodingQuarry_transcript_49070-T1, initial, 39972, 40793
-recovered CodingQuarry_transcript_49070-T1, initial, 41751, 41847
-recovered CodingQuarry_transcript_49070-T1, terminal, 45055, 45145
-recovered CodingQuarry_transcript_49070-T1, internal, 42004, 42258
-recovered CodingQuarry_transcript_49070-T1, internal, 42699, 42868
-recovered CodingQuarry_transcript_49070-T1, internal, 43000, 43065
-recovered CodingQuarry_transcript_49070-T1, internal, 43244, 43402
-recovered CodingQuarry_transcript_49070-T1, internal, 43499, 43651
-recovered CodingQuarry_transcript_49070-T1, internal, 43944, 44148
Valid prediction for CodingQuarry_transcript_49068-T1
Valid prediction for snap_scaffold_4-snap.2748-T1
Valid prediction for GeneMark_model.17391_t
Valid prediction for GeneMark_model.17386_t
Valid prediction for GlimmerHMM_glimmerT_10685-T1
Valid prediction for HiQ_model.g6999.t1
Valid prediction for snap_scaffold_4-snap.2728-T1
Valid prediction for snap_scaffold_4-snap.2724-T1
Couldn't classify 40907, 41023
Sorry, prediction pasa_asmbl_42359.p1 fails validation.
(ATG)	 CA	39972-40793	GT	AGG
(GTG)	 AG	40907-41023	AC	CCA
-recovered pasa_asmbl_42359.p1, initial, 39972, 40793
Valid prediction for snap_scaffold_4-snap.2720-T1
Valid prediction for HiQ_model.g7020.t1
Valid prediction for GeneMark_model.17359_t
Valid prediction for GeneMark_model.17366_t
Valid prediction for GeneMark_model.17367_t
Valid prediction for Augustus_model.g7010.t1
Valid prediction for GeneMark_model.17364_t
Valid prediction for pasa_asmbl_41712.p1
Couldn't classify 10393, 10398
Sorry, prediction CodingQuarry_transcript_49075-T1 fails validation.
(ATG)	 TA	10393-10398	GA	GTG
(CAG)	 AG	12303-12405	GT	GGG
(GTG)	 AG	13782-13888	GT	AGG
(GTA)	 AG	14467-14567	GT	TGG
(CTG)	 AG	14670-14804	GT	GGG
(GCT)	 AG	15712-15829	GT	AGG
(ATC)	 AG	16149-16241	GT	AGG
(GAC)	 AG	16430-16526	GT	AGG
(TTG)	 AG	16694-16745	GT	AGG
(AAC)	 AG	16871-16999	GT	AAG
(AAA)	 AG	17633-17653	GT	ATG
(AAG)	 AG	18291-18426	GT	AGG
(CTT)	 AG	19202-19344	GT	AGG
(AAC)	 AG	19470-19509	GA	AAG
-recovered CodingQuarry_transcript_49075-T1, terminal, 19470, 19509
-recovered CodingQuarry_transcript_49075-T1, internal, 12303, 12405
-recovered CodingQuarry_transcript_49075-T1, internal, 13782, 13888
-recovered CodingQuarry_transcript_49075-T1, internal, 14467, 14567
-recovered CodingQuarry_transcript_49075-T1, internal, 14670, 14804
-recovered CodingQuarry_transcript_49075-T1, internal, 15712, 15829
-recovered CodingQuarry_transcript_49075-T1, internal, 16149, 16241
-recovered CodingQuarry_transcript_49075-T1, internal, 16430, 16526
-recovered CodingQuarry_transcript_49075-T1, internal, 16694, 16745
-recovered CodingQuarry_transcript_49075-T1, internal, 16871, 16999
-recovered CodingQuarry_transcript_49075-T1, internal, 17633, 17653
-recovered CodingQuarry_transcript_49075-T1, internal, 18291, 18426
-recovered CodingQuarry_transcript_49075-T1, internal, 19202, 19344
Valid prediction for snap_scaffold_4-snap.2717-T1
Valid prediction for GlimmerHMM_glimmerT_10684-T1
Valid prediction for snap_scaffold_4-snap.2743-T1
Valid prediction for HiQ_model.g7012.t1
Valid prediction for GlimmerHMM_glimmerT_10674-T1
Valid prediction for snap_scaffold_4-snap.2742-T1
Valid prediction for Augustus_model.g7019.t1
Valid prediction for GeneMark_model.17385_t
Valid prediction for GlimmerHMM_glimmerT_10688-T1
Valid prediction for snap_scaffold_4-snap.2741-T1
Valid prediction for HiQ_model.g7026.t1
Valid prediction for GeneMark_model.17372_t
Valid prediction for GlimmerHMM_glimmerT_10683-T1
Valid prediction for GeneMark_model.17390_t
Valid prediction for GlimmerHMM_glimmerT_10679-T1
Valid prediction for GlimmerHMM_glimmerT_10668-T1
Valid prediction for CodingQuarry_transcript_49073-T1
Valid prediction for GeneMark_model.17362_t
Valid prediction for pasa_asmbl_41709.p1
Valid prediction for snap_scaffold_4-snap.2747-T1
Valid prediction for GlimmerHMM_glimmerT_10676-T1
Valid prediction for CodingQuarry_transcript_49072-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 357496
-exon list size: 773


building trellis

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3.9    
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8.8    
8.9    
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29.0    
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31.0    
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31.9    
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32.1    
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33.0    
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43.0    
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81.0    
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82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
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85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
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89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
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90.5    
90.6    
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90.8    
91.0    
91.1    
91.2    
91.4    
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91.6    
91.7    
91.9    
92.0    
92.1    
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92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
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93.8    
93.9    
94.1    
94.2    
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94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
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97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
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98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 35 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support