-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_1222190-1478436 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.14626_t Valid prediction for GeneMark_model.14618_t Valid prediction for GeneMark_model.14609_t Valid prediction for snap_scaffold_4-snap.307-T1 Valid prediction for GeneMark_model.14586_t Valid prediction for GlimmerHMM_glimmerT_8939-T1 Valid prediction for GeneMark_model.14628_t Valid prediction for GlimmerHMM_glimmerT_8926-T1 Valid prediction for GlimmerHMM_glimmerT_8946-T1 Valid prediction for GeneMark_model.14649_t Valid prediction for GlimmerHMM_glimmerT_8940-T1 Valid prediction for GlimmerHMM_glimmerT_8955-T1 Valid prediction for snap_scaffold_4-snap.288-T1 Valid prediction for GlimmerHMM_glimmerT_8948-T1 Valid prediction for GeneMark_model.14611_t Valid prediction for snap_scaffold_4-snap.277-T1 Valid prediction for pasa_asmbl_42429.p2 Valid prediction for GeneMark_model.14601_t Valid prediction for snap_scaffold_4-snap.292-T1 Valid prediction for GlimmerHMM_glimmerT_8923-T1 Valid prediction for Augustus_model.g5826.t1 Valid prediction for GeneMark_model.14651_t Valid prediction for snap_scaffold_4-snap.322-T1 Valid prediction for snap_scaffold_4-snap.301-T1 Valid prediction for snap_scaffold_4-snap.284-T1 Valid prediction for GeneMark_model.14642_t Valid prediction for GlimmerHMM_glimmerT_8938-T1 Valid prediction for snap_scaffold_4-snap.297-T1 Valid prediction for GeneMark_model.14620_t Valid prediction for GeneMark_model.14646_t Valid prediction for GlimmerHMM_glimmerT_8949-T1 Valid prediction for CodingQuarry_transcript_48782-T1 Valid prediction for snap_scaffold_4-snap.314-T1 Valid prediction for HiQ_model.g5839.t1 Valid prediction for snap_scaffold_4-snap.296-T1 Valid prediction for GeneMark_model.14602_t Valid prediction for GeneMark_model.14623_t Valid prediction for GeneMark_model.14598_t Valid prediction for GeneMark_model.14629_t Valid prediction for snap_scaffold_4-snap.321-T1 Valid prediction for snap_scaffold_4-snap.328-T1 Valid prediction for GeneMark_model.14613_t Valid prediction for snap_scaffold_4-snap.280-T1 Valid prediction for GeneMark_model.14596_t Valid prediction for snap_scaffold_4-snap.279-T1 Valid prediction for GlimmerHMM_glimmerT_8933-T1 Valid prediction for Augustus_model.g5828.t1 Valid prediction for snap_scaffold_4-snap.320-T1 Valid prediction for snap_scaffold_4-snap.283-T1 Valid prediction for GlimmerHMM_glimmerT_8944-T1 Valid prediction for snap_scaffold_4-snap.273-T1 Valid prediction for GeneMark_model.14634_t Valid prediction for GeneMark_model.14640_t Valid prediction for GeneMark_model.14637_t Valid prediction for snap_scaffold_4-snap.294-T1 Valid prediction for GeneMark_model.14644_t Valid prediction for snap_scaffold_4-snap.303-T1 Valid prediction for snap_scaffold_4-snap.312-T1 Valid prediction for snap_scaffold_4-snap.337-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_4-snap.293-T1 Valid prediction for GlimmerHMM_glimmerT_8927-T1 Valid prediction for GeneMark_model.14606_t Valid prediction for GeneMark_model.14639_t Valid prediction for snap_scaffold_4-snap.305-T1 Valid prediction for Augustus_model.g5827.t1 Valid prediction for GeneMark_model.14583_t Valid prediction for GeneMark_model.14590_t Valid prediction for Augustus_model.g5836.t1 Valid prediction for GeneMark_model.14588_t Valid prediction for GeneMark_model.14615_t Valid prediction for GeneMark_model.14584_t Valid prediction for Augustus_model.g5824.t1 Valid prediction for GeneMark_model.14604_t Valid prediction for snap_scaffold_4-snap.332-T1 Valid prediction for GeneMark_model.14635_t Valid prediction for snap_scaffold_4-snap.323-T1 Valid prediction for GlimmerHMM_glimmerT_8943-T1 Valid prediction for GeneMark_model.14581_t Valid prediction for snap_scaffold_4-snap.304-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_8931-T1 Valid prediction for GeneMark_model.14653_t Valid prediction for snap_scaffold_4-snap.327-T1 Valid prediction for GeneMark_model.14631_t Valid prediction for snap_scaffold_4-snap.308-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for snap_scaffold_4-snap.316-T1 Valid prediction for snap_scaffold_4-snap.286-T1 Valid prediction for snap_scaffold_4-snap.335-T1 Valid prediction for GeneMark_model.14638_t Valid prediction for snap_scaffold_4-snap.325-T1 Valid prediction for GlimmerHMM_glimmerT_8950-T1 Valid prediction for GeneMark_model.14607_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.14630_t Valid prediction for snap_scaffold_4-snap.319-T1 Valid prediction for snap_scaffold_4-snap.338-T1 Valid prediction for HiQ_model.g5829.t1 Valid prediction for Augustus_model.g5834.t1 Valid prediction for GlimmerHMM_glimmerT_8953-T1 Valid prediction for GeneMark_model.14608_t Valid prediction for Augustus_model.g5832.t1 Valid prediction for GeneMark_model.14627_t Couldn't classify 27086, 27135 Couldn't classify 35146, 35346 Sorry, prediction pasa_asmbl_41121.p1 fails validation. (AAA) AG 27086-27135 GT AGG (CGT) AG 29272-29367 GT GGG (GTT) AG 29448-29532 GT AGG (TTC) AG 30413-30546 GT ACG (ATA) AG 32369-32496 GT AGG (GCA) AG 33398-33534 GT AGG (GGG) AG 33664-33769 GT TGG (GTA) AG 34085-34242 GC AGG (GTG) AG 35146-35346 GG CAG -recovered pasa_asmbl_41121.p1, internal, 27086, 27135 -recovered pasa_asmbl_41121.p1, internal, 29272, 29367 -recovered pasa_asmbl_41121.p1, internal, 29448, 29532 -recovered pasa_asmbl_41121.p1, internal, 30413, 30546 -recovered pasa_asmbl_41121.p1, internal, 32369, 32496 -recovered pasa_asmbl_41121.p1, internal, 33398, 33534 -recovered pasa_asmbl_41121.p1, internal, 33664, 33769 -recovered pasa_asmbl_41121.p1, internal, 34085, 34242 Valid prediction for GeneMark_model.14632_t Valid prediction for snap_scaffold_4-snap.329-T1 Valid prediction for GeneMark_model.14652_t Valid prediction for snap_scaffold_4-snap.285-T1 Valid prediction for Augustus_model.g5833.t1 Valid prediction for snap_scaffold_4-snap.331-T1 Valid prediction for GeneMark_model.14617_t Valid prediction for Augustus_model.g5825.t1 Valid prediction for Augustus_model.g5837.t1 Valid prediction for snap_scaffold_4-snap.306-T1 Valid prediction for GeneMark_model.14614_t Valid prediction for GeneMark_model.14580_t Valid prediction for GlimmerHMM_glimmerT_8936-T1 Valid prediction for CodingQuarry_transcript_48785-T1 Couldn't classify 159725, 159848 Sorry, prediction pasa_asmbl_41106.p1 fails validation. (GCC) GA 159725-159848 GT AGG (TCA) AG 160618-160668 GT AGG (ATG) AG 161697-161814 GT AAG (GCC) AG 163176-163338 GT ATG (GCT) AG 164187-164255 GT AAG (GTT) AG 164348-164508 GT GTG (GCG) AG 164734-164797 GT AGG (GAG) AG 165040-165072 CC AAC add_exon() Sorry, pasa_asmbl_41106.p1 161697-161814-initial-1 is invalid. -recovered pasa_asmbl_41106.p1, initial, 161697, 161814 -recovered pasa_asmbl_41106.p1, terminal, 165040, 165072 -recovered pasa_asmbl_41106.p1, internal, 160618, 160668 -recovered pasa_asmbl_41106.p1, internal, 161697, 161814 -recovered pasa_asmbl_41106.p1, internal, 163176, 163338 -recovered pasa_asmbl_41106.p1, internal, 164187, 164255 -recovered pasa_asmbl_41106.p1, internal, 164348, 164508 -recovered pasa_asmbl_41106.p1, internal, 164734, 164797 Valid prediction for GeneMark_model.14643_t Valid prediction for GeneMark_model.14619_t Valid prediction for GlimmerHMM_glimmerT_8924-T1 Valid prediction for GeneMark_model.14636_t Valid prediction for GlimmerHMM_glimmerT_8941-T1 Valid prediction for snap_scaffold_4-snap.313-T1 Valid prediction for snap_scaffold_4-snap.276-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_8951-T1 Valid prediction for pasa_asmbl_42432.p2 Valid prediction for GeneMark_model.14591_t Valid prediction for GeneMark_model.14582_t Valid prediction for snap_scaffold_4-snap.278-T1 Valid prediction for snap_scaffold_4-snap.334-T1 Valid prediction for CodingQuarry_transcript_48784-T1 Valid prediction for snap_scaffold_4-snap.336-T1 Valid prediction for snap_scaffold_4-snap.300-T1 Couldn't classify 71926, 71995 Couldn't classify 74493, 74591 Sorry, prediction pasa_asmbl_41116.p1 fails validation. (GAT) CA 71926-71995 GT GGG (CTG) AG 74161-74324 GT AGG (GAG) AG 74493-74591 CA ACC -recovered pasa_asmbl_41116.p1, internal, 74161, 74324 Valid prediction for snap_scaffold_4-snap.317-T1 Valid prediction for snap_scaffold_4-snap.298-T1 Valid prediction for GlimmerHMM_glimmerT_8945-T1 Valid prediction for GeneMark_model.14599_t Valid prediction for GlimmerHMM_glimmerT_8925-T1 Valid prediction for GlimmerHMM_glimmerT_8930-T1 Valid prediction for GeneMark_model.14648_t Valid prediction for snap_scaffold_4-snap.324-T1 Valid prediction for GeneMark_model.14595_t Valid prediction for GeneMark_model.14633_t Valid prediction for snap_scaffold_4-snap.289-T1 Valid prediction for snap_scaffold_4-snap.333-T1 Valid prediction for snap_scaffold_4-snap.310-T1 Valid prediction for GlimmerHMM_glimmerT_8952-T1 Valid prediction for Augustus_model.g5831.t1 Valid prediction for snap_scaffold_4-snap.282-T1 Valid prediction for GeneMark_model.14603_t Valid prediction for Augustus_model.g5835.t1 Valid prediction for CodingQuarry_transcript_48783-T1 Valid prediction for GeneMark_model.14600_t Valid prediction for GeneMark_model.14647_t Valid prediction for GlimmerHMM_glimmerT_8956-T1 Valid prediction for GlimmerHMM_glimmerT_8929-T1 Valid prediction for snap_scaffold_4-snap.315-T1 Valid prediction for GeneMark_model.14641_t Couldn't classify 21176, 21274 Couldn't classify 24844, 24923 Sorry, prediction pasa_asmbl_41122.p1 fails validation. (AGC) TG 21176-21274 GT AGG (GAC) AG 22456-22562 GT AGG (GAG) AG 22919-23089 GT TGG (GTA) AG 23937-24049 GT AGG (GTG) AG 24844-24923 GG TGG -recovered pasa_asmbl_41122.p1, terminal, 23937, 24049 -recovered pasa_asmbl_41122.p1, internal, 22456, 22562 -recovered pasa_asmbl_41122.p1, internal, 22919, 23089 -recovered pasa_asmbl_41122.p1, internal, 23937, 24049 Valid prediction for GeneMark_model.14612_t Valid prediction for snap_scaffold_4-snap.302-T1 Valid prediction for GeneMark_model.14605_t Valid prediction for GeneMark_model.14587_t Valid prediction for GlimmerHMM_glimmerT_8932-T1 Valid prediction for GlimmerHMM_glimmerT_8947-T1 Valid prediction for GeneMark_model.14610_t Valid prediction for snap_scaffold_4-snap.274-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.14589_t Valid prediction for snap_scaffold_4-snap.291-T1 Valid prediction for snap_scaffold_4-snap.275-T1 Valid prediction for GeneMark_model.14616_t Couldn't classify 138862, 138968 Couldn't classify 146148, 146345 Sorry, prediction pasa_asmbl_41110.p1 fails validation. (CAG) AG 138862-138968 GT CGG (CTC) AG 140388-141263 GT AAG (GTT) AG 141555-142289 GT AGG (CTC) AG 142412-142563 GT AGG (CTC) AG 142847-142952 GT AGG (GAG) AG 144095-144179 GT AGG (AAC) AG 145040-145227 GT AAG (AAA) AG 145463-145643 GT TTG (CAG) AG 145849-145986 GT TGG (CAT) AG 146148-146345 GA AGG add_exon() Sorry, pasa_asmbl_41110.p1 145040-145227-terminal-2 is invalid. -recovered pasa_asmbl_41110.p1, terminal, 145040, 145227 -recovered pasa_asmbl_41110.p1, internal, 138862, 138968 -recovered pasa_asmbl_41110.p1, internal, 140388, 141263 -recovered pasa_asmbl_41110.p1, internal, 141555, 142289 -recovered pasa_asmbl_41110.p1, internal, 142412, 142563 -recovered pasa_asmbl_41110.p1, internal, 142847, 142952 -recovered pasa_asmbl_41110.p1, internal, 144095, 144179 -recovered pasa_asmbl_41110.p1, internal, 145040, 145227 -recovered pasa_asmbl_41110.p1, internal, 145463, 145643 -recovered pasa_asmbl_41110.p1, internal, 145849, 145986 Valid prediction for Augustus_model.g5830.t1 Valid prediction for GeneMark_model.14593_t Valid prediction for snap_scaffold_4-snap.287-T1 Valid prediction for snap_scaffold_4-snap.311-T1 Valid prediction for GeneMark_model.14650_t Valid prediction for pasa_asmbl_41123.p1 Valid prediction for snap_scaffold_4-snap.281-T1 Valid prediction for snap_scaffold_4-snap.326-T1 Valid prediction for snap_scaffold_4-snap.330-T1 Valid prediction for GeneMark_model.14592_t Valid prediction for GeneMark_model.14625_t Valid prediction for GlimmerHMM_glimmerT_8934-T1 Valid prediction for snap_scaffold_4-snap.299-T1 Valid prediction for GlimmerHMM_glimmerT_8954-T1 Valid prediction for pasa_asmbl_41114.p1 Valid prediction for snap_scaffold_4-snap.295-T1 Valid prediction for GlimmerHMM_glimmerT_8922-T1 Valid prediction for GeneMark_model.14597_t Valid prediction for snap_scaffold_4-snap.318-T1 Valid prediction for GlimmerHMM_glimmerT_8937-T1 Valid prediction for GeneMark_model.14654_t Valid prediction for GlimmerHMM_glimmerT_8928-T1 Valid prediction for HiQ_model.g5838.t1 Valid prediction for GeneMark_model.14585_t Valid prediction for GlimmerHMM_glimmerT_8935-T1 Valid prediction for pasa_asmbl_41119.p1 Valid prediction for GeneMark_model.14621_t Valid prediction for GlimmerHMM_glimmerT_8942-T1 Valid prediction for GeneMark_model.14645_t Valid prediction for snap_scaffold_4-snap.290-T1 Valid prediction for snap_scaffold_4-snap.309-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 215065, rend_intergenic: 215062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11731, rend_intergenic: 3798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14625, rend_intergenic: 12151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15432, rend_intergenic: 14839 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19918, rend_intergenic: 15460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28494, rend_intergenic: 20086 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39716, rend_intergenic: 28650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48059, rend_intergenic: 42563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49955, rend_intergenic: 48325 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55793, rend_intergenic: 50825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72662, rend_intergenic: 57260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87315, rend_intergenic: 73645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96597, rend_intergenic: 92401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105277, rend_intergenic: 98327 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114231, rend_intergenic: 109864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122269, rend_intergenic: 115608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138199, rend_intergenic: 134176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154966, rend_intergenic: 145459 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159178, rend_intergenic: 156726 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165018, rend_intergenic: 161114 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171732, rend_intergenic: 166210 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178937, rend_intergenic: 173416 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204192, rend_intergenic: 180948 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208829, rend_intergenic: 206169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209612, rend_intergenic: 209328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214546, rend_intergenic: 209680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227083, rend_intergenic: 215062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236287, rend_intergenic: 232475 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 245380, rend_intergenic: 243756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 256247 -exon list size: 1204 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.1 1.2 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.7 2.7 2.8 2.9 3.0 3.1 3.2 3.2 3.3 3.4 3.5 3.6 3.6 3.7 3.8 3.9 4.0 4.1 4.1 4.2 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.9 5.0 5.1 5.1 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.9 9.0 9.0 9.1 9.2 9.3 9.4 9.5 9.5 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.3 11.4 11.4 11.5 11.6 11.7 11.8 11.9 11.9 12.0 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.3 13.3 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.3 14.3 14.4 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.2 15.3 15.3 15.4 15.5 15.6 15.7 15.8 15.8 15.9 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.1 18.2 18.2 18.3 18.4 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.1 20.1 20.2 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.6 21.6 21.7 21.8 21.9 22.0 22.1 22.1 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.5 23.5 23.6 23.7 23.8 23.9 24.0 24.0 24.1 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.5 25.5 25.6 25.7 25.8 25.9 26.0 26.0 26.1 26.2 26.3 26.4 26.5 26.5 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.9 27.9 28.0 28.1 28.2 28.3 28.4 28.4 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.9 29.9 30.0 30.1 30.2 30.3 30.3 30.4 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.2 32.3 32.3 32.4 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.6 35.7 35.7 35.8 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.5 36.6 36.7 36.7 36.8 36.9 37.0 37.1 37.1 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.5 38.6 38.6 38.7 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.4 40.5 40.5 40.6 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.4 42.5 42.5 42.6 42.7 42.8 42.9 43.0 43.0 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.3 45.4 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.7 46.8 46.8 46.9 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.8 48.9 49.0 49.1 49.2 49.3 49.3 49.4 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.6 50.7 50.7 50.8 50.9 51.0 51.1 51.2 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.1 53.2 53.2 53.3 53.4 53.5 53.6 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.6 54.7 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.5 56.6 56.6 56.7 56.8 56.9 57.0 57.0 57.1 57.2 57.3 57.4 57.5 57.5 57.6 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.4 59.5 59.5 59.6 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.3 61.4 61.4 61.5 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.9 62.9 63.0 63.1 63.2 63.3 63.3 63.4 63.5 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.2 64.3 64.3 64.4 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.6 67.7 67.7 67.8 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.6 69.7 69.7 69.8 69.9 70.0 70.1 70.1 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.6 71.6 71.7 71.8 71.9 72.0 72.1 72.1 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.5 73.5 73.6 73.7 73.8 73.9 74.0 74.0 74.1 74.2 74.3 74.4 74.5 74.5 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.9 76.0 76.0 76.1 76.2 76.3 76.4 76.5 76.5 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.9 77.9 78.0 78.1 78.2 78.3 78.4 78.4 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.8 79.9 79.9 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.7 81.8 81.8 81.9 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.1 84.2 84.2 84.3 84.4 84.5 84.6 84.7 84.7 84.8 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.6 85.7 85.7 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.7 86.7 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.5 87.6 87.6 87.7 87.8 87.9 88.0 88.1 88.1 88.2 88.3 88.4 88.5 88.6 88.6 88.7 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.5 90.5 90.6 90.7 90.8 90.9 91.0 91.0 91.1 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.9 94.9 95.0 95.1 95.2 95.3 95.4 95.4 95.5 95.6 95.7 95.8 95.9 95.9 96.0 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.7 96.8 96.8 96.9 97.0 97.1 97.2 97.3 97.3 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.8 98.9 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.7 99.8 99.8 99.9 -found 50 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 215065, rend_intergenic: 215062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11731, rend_intergenic: 3798 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14625, rend_intergenic: 12151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15432, rend_intergenic: 14839 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19918, rend_intergenic: 15460 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28494, rend_intergenic: 20086 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39716, rend_intergenic: 28650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48059, rend_intergenic: 42563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49955, rend_intergenic: 48325 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55793, rend_intergenic: 50825 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72662, rend_intergenic: 57260 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87315, rend_intergenic: 73645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96597, rend_intergenic: 92401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105277, rend_intergenic: 98327 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114231, rend_intergenic: 109864 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122269, rend_intergenic: 115608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138199, rend_intergenic: 134176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154966, rend_intergenic: 145459 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159178, rend_intergenic: 156726 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165018, rend_intergenic: 161114 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171732, rend_intergenic: 166210 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178937, rend_intergenic: 173416 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204192, rend_intergenic: 180948 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208829, rend_intergenic: 206169 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209612, rend_intergenic: 209328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214546, rend_intergenic: 209680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227083, rend_intergenic: 215062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236287, rend_intergenic: 232475 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 245380, rend_intergenic: 243756 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 30 predictions persist after filtering for low support -building DP trellis -building trellis in range 245381 - 256247 -exon list size: 32 building trellis 2.9 5.9 8.8 11.8 14.7 17.6 20.6 23.5 26.5 29.4 32.4 35.3 38.2 41.2 44.1 47.1 50.0 52.9 55.9 58.8 61.8 64.7 67.6 70.6 73.5 76.5 79.4 82.4 85.3 88.2 91.2 94.1 97.1 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support