-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_11577816-11706929

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_4-snap.2499-T1
Valid prediction for GlimmerHMM_glimmerT_10495-T1
Valid prediction for GeneMark_model.17104_t
Valid prediction for snap_scaffold_4-snap.2504-T1
Valid prediction for snap_scaffold_4-snap.2498-T1
Valid prediction for GeneMark_model.17117_t
Valid prediction for GeneMark_model.17105_t
Valid prediction for GeneMark_model.17109_t
Valid prediction for GlimmerHMM_glimmerT_10496-T1
Valid prediction for GeneMark_model.17110_t
Valid prediction for GeneMark_model.17116_t
Valid prediction for snap_scaffold_4-snap.2495-T1
Valid prediction for GeneMark_model.17103_t
Valid prediction for GlimmerHMM_glimmerT_10493-T1
Valid prediction for GeneMark_model.17108_t
Valid prediction for GeneMark_model.17113_t
Valid prediction for Augustus_model.g6883.t1
Valid prediction for GeneMark_model.17114_t
Valid prediction for GlimmerHMM_glimmerT_10488-T1
Valid prediction for snap_scaffold_4-snap.2502-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2494-T1
Valid prediction for GlimmerHMM_glimmerT_10483-T1
Valid prediction for GlimmerHMM_glimmerT_10491-T1
Valid prediction for GlimmerHMM_glimmerT_10492-T1
Valid prediction for Augustus_model.g6884.t1
Valid prediction for snap_scaffold_4-snap.2501-T1
Valid prediction for snap_scaffold_4-snap.2496-T1
Valid prediction for GlimmerHMM_glimmerT_10489-T1
Valid prediction for GeneMark_model.17115_t
Valid prediction for GlimmerHMM_glimmerT_10490-T1
Valid prediction for GlimmerHMM_glimmerT_10494-T1
Valid prediction for snap_scaffold_4-snap.2497-T1
Valid prediction for GeneMark_model.17118_t
Valid prediction for GlimmerHMM_glimmerT_10486-T1
Valid prediction for GlimmerHMM_glimmerT_10484-T1
Valid prediction for GeneMark_model.17102_t
Valid prediction for snap_scaffold_4-snap.2493-T1
Valid prediction for GlimmerHMM_glimmerT_10487-T1
Valid prediction for Augustus_model.g6885.t1
Valid prediction for GlimmerHMM_glimmerT_10485-T1
Valid prediction for Augustus_model.g6882.t1
Valid prediction for snap_scaffold_4-snap.2500-T1
Valid prediction for GeneMark_model.17106_t
Valid prediction for snap_scaffold_4-snap.2503-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.17107_t
Valid prediction for GeneMark_model.17112_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 115401, rend_intergenic: 113812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 129114
-exon list size: 136


building trellis

0.7    
1.4    
2.2    
2.9    
3.6    
4.3    
5.1    
5.8    
6.5    
7.2    
8.0    
8.7    
9.4    
10.1    
10.9    
11.6    
12.3    
13.0    
13.8    
14.5    
15.2    
15.9    
16.7    
17.4    
18.1    
18.8    
19.6    
20.3    
21.0    
21.7    
22.5    
23.2    
23.9    
24.6    
25.4    
26.1    
26.8    
27.5    
28.3    
29.0    
29.7    
30.4    
31.2    
31.9    
32.6    
33.3    
34.1    
34.8    
35.5    
36.2    
37.0    
37.7    
38.4    
39.1    
39.9    
40.6    
41.3    
42.0    
42.8    
43.5    
44.2    
44.9    
45.7    
46.4    
47.1    
47.8    
48.6    
49.3    
50.0    
50.7    
51.4    
52.2    
52.9    
53.6    
54.3    
55.1    
55.8    
56.5    
57.2    
58.0    
58.7    
59.4    
60.1    
60.9    
61.6    
62.3    
63.0    
63.8    
64.5    
65.2    
65.9    
66.7    
67.4    
68.1    
68.8    
69.6    
70.3    
71.0    
71.7    
72.5    
73.2    
73.9    
74.6    
75.4    
76.1    
76.8    
77.5    
78.3    
79.0    
79.7    
80.4    
81.2    
81.9    
82.6    
83.3    
84.1    
84.8    
85.5    
86.2    
87.0    
87.7    
88.4    
89.1    
89.9    
90.6    
91.3    
92.0    
92.8    
93.5    
94.2    
94.9    
95.7    
96.4    
97.1    
97.8    
98.6    
99.3    
-found 11 predictions from path traversal
Error with prediction: snap lend_intergenic: 115401, rend_intergenic: 113812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support