-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_4/scaffold_4_11153876-11348255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g6851.t1
Valid prediction for GlimmerHMM_glimmerT_10438-T1
Valid prediction for GeneMark_model.17049_t
Valid prediction for Augustus_model.g6860.t1
Valid prediction for Augustus_model.g6849.t1
Valid prediction for GeneMark_model.17006_t
Valid prediction for snap_scaffold_4-snap.2432-T1
Valid prediction for GeneMark_model.17025_t
Valid prediction for GeneMark_model.17062_t
Valid prediction for snap_scaffold_4-snap.2427-T1
Valid prediction for snap_scaffold_4-snap.2430-T1
Valid prediction for GeneMark_model.17063_t
Valid prediction for Augustus_model.g6864.t1
Valid prediction for Augustus_model.g6853.t1
Valid prediction for GeneMark_model.17017_t
Valid prediction for snap_scaffold_4-snap.2459-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_10457-T1
Couldn't classify 143476, 143633
Couldn't classify 144398, 144438
Sorry, prediction pasa_asmbl_43519.p1 fails validation.
(CTA)	 AG	143476-143633	GT	AGG
(GGC)	 AG	144144-144271	GT	AGG
(AGC)	 AG	144398-144438	AA	CCA
-recovered pasa_asmbl_43519.p1, internal, 143476, 143633
-recovered pasa_asmbl_43519.p1, internal, 144144, 144271
Valid prediction for GlimmerHMM_glimmerT_10425-T1
Valid prediction for Augustus_model.g6837.t1
Valid prediction for GeneMark_model.17040_t
Valid prediction for GeneMark_model.17011_t
Valid prediction for GeneMark_model.17012_t
Valid prediction for GlimmerHMM_glimmerT_10456-T1
Valid prediction for snap_scaffold_4-snap.2414-T1
Valid prediction for Augustus_model.g6840.t1
Valid prediction for Augustus_model.g6843.t1
Valid prediction for snap_scaffold_4-snap.2461-T1
Valid prediction for Augustus_model.g6848.t1
Valid prediction for snap_scaffold_4-snap.2442-T1
Valid prediction for GlimmerHMM_glimmerT_10447-T1
Valid prediction for GlimmerHMM_glimmerT_10448-T1
Valid prediction for GlimmerHMM_glimmerT_10445-T1
Valid prediction for snap_scaffold_4-snap.2439-T1
Valid prediction for Augustus_model.g6859.t1
Valid prediction for Augustus_model.g6839.t1
Valid prediction for GlimmerHMM_glimmerT_10452-T1
Valid prediction for snap_scaffold_4-snap.2437-T1
Valid prediction for GeneMark_model.17021_t
Valid prediction for Augustus_model.g6865.t1
Valid prediction for GeneMark_model.17009_t
Valid prediction for GeneMark_model.17046_t
Valid prediction for GlimmerHMM_glimmerT_10437-T1
Valid prediction for snap_scaffold_4-snap.2444-T1
Couldn't classify 145565, 145572
Sorry, prediction pasa_asmbl_43035.p1 fails validation.
(CAC)	 AA	145565-145572	GT	AGG
(GAC)	 AG	145672-145906	GT	AGG
(GTG)	 AG	146048-146242	GT	AGG
(GTG)	 AG	146411-146798	GT	TGG
(GCT)	 AG	147671-147847	GT	AGG
(GTA)	 AG	148031-148201	GT	GGG
(GGG)	 AG	148315-148491	GT	CGG
(GTA)	 AG	150229-150331	GT	TGG
(GAA)	 AG	151035-151308	GT	AGG
(GGG)	 AG	151568-151816	CA	GAC
-recovered pasa_asmbl_43035.p1, terminal, 151568, 151816
-recovered pasa_asmbl_43035.p1, internal, 145672, 145906
-recovered pasa_asmbl_43035.p1, internal, 146048, 146242
-recovered pasa_asmbl_43035.p1, internal, 146411, 146798
-recovered pasa_asmbl_43035.p1, internal, 147671, 147847
-recovered pasa_asmbl_43035.p1, internal, 148031, 148201
-recovered pasa_asmbl_43035.p1, internal, 148315, 148491
-recovered pasa_asmbl_43035.p1, internal, 150229, 150331
-recovered pasa_asmbl_43035.p1, internal, 151035, 151308
Valid prediction for Augustus_model.g6861.t1
Valid prediction for snap_scaffold_4-snap.2455-T1
Valid prediction for GeneMark_model.17060_t
Valid prediction for snap_scaffold_4-snap.2440-T1
Valid prediction for Augustus_model.g6854.t1
Valid prediction for GeneMark_model.17027_t
Valid prediction for GeneMark_model.17001_t
Valid prediction for GeneMark_model.17038_t
Valid prediction for snap_scaffold_4-snap.2424-T1
Valid prediction for GeneMark_model.17028_t
Valid prediction for Augustus_model.g6855.t1
Valid prediction for GlimmerHMM_glimmerT_10455-T1
Valid prediction for snap_scaffold_4-snap.2436-T1
Valid prediction for GeneMark_model.17042_t
Valid prediction for GlimmerHMM_glimmerT_10450-T1
Valid prediction for GeneMark_model.17030_t
Valid prediction for Augustus_model.g6847.t1
Valid prediction for snap_scaffold_4-snap.2415-T1
Valid prediction for snap_scaffold_4-snap.2453-T1
Valid prediction for Augustus_model.g6846.t1
Valid prediction for GlimmerHMM_glimmerT_10434-T1
Valid prediction for GlimmerHMM_glimmerT_10429-T1
Valid prediction for GeneMark_model.17048_t
Valid prediction for snap_scaffold_4-snap.2451-T1
Valid prediction for GeneMark_model.17053_t
Valid prediction for GeneMark_model.17026_t
Valid prediction for GeneMark_model.17065_t
Valid prediction for snap_scaffold_4-snap.2419-T1
Valid prediction for GeneMark_model.17044_t
Valid prediction for snap_scaffold_4-snap.2457-T1
Valid prediction for Augustus_model.g6845.t1
Valid prediction for GeneMark_model.17003_t
Couldn't classify 170286, 170742
Sorry, prediction pasa_asmbl_43037.p1 fails validation.
(GCA)	 CT	170286-170742	GT	AGG
(GTA)	 AG	172269-172368	GT	AAG
(AGC)	 AG	173177-173329	GT	AGG
(GAT)	 AG	173829-173986	GT	AGG
(CCA)	 AG	174668-174809	GT	AGG
(AGC)	 AG	175707-175833	GT	AGG
(GAC)	 AG	176033-176191	GT	AGG
(GTG)	 AG	176346-176696	GT	CGG
(GTG)	 AG	176786-176914	TC	GAT
add_exon() Sorry, pasa_asmbl_43037.p1 173177-173329-terminal-1 is invalid.
-recovered pasa_asmbl_43037.p1, terminal, 173177, 173329
-recovered pasa_asmbl_43037.p1, terminal, 176786, 176914
-recovered pasa_asmbl_43037.p1, internal, 172269, 172368
-recovered pasa_asmbl_43037.p1, internal, 173177, 173329
-recovered pasa_asmbl_43037.p1, internal, 173829, 173986
-recovered pasa_asmbl_43037.p1, internal, 174668, 174809
-recovered pasa_asmbl_43037.p1, internal, 175707, 175833
-recovered pasa_asmbl_43037.p1, internal, 176033, 176191
-recovered pasa_asmbl_43037.p1, internal, 176346, 176696
Valid prediction for GeneMark_model.17055_t
Valid prediction for GlimmerHMM_glimmerT_10433-T1
Valid prediction for snap_scaffold_4-snap.2412-T1
Valid prediction for snap_scaffold_4-snap.2433-T1
Valid prediction for snap_scaffold_4-snap.2429-T1
Valid prediction for GeneMark_model.17051_t
Valid prediction for snap_scaffold_4-snap.2421-T1
Valid prediction for GlimmerHMM_glimmerT_10446-T1
Valid prediction for snap_scaffold_4-snap.2446-T1
Valid prediction for GlimmerHMM_glimmerT_10442-T1
Valid prediction for GeneMark_model.17035_t
Valid prediction for GeneMark_model.17057_t
Valid prediction for GeneMark_model.17019_t
Valid prediction for GlimmerHMM_glimmerT_10430-T1
Valid prediction for Augustus_model.g6836.t1
Valid prediction for Augustus_model.g6857.t1
Valid prediction for GlimmerHMM_glimmerT_10436-T1
Valid prediction for Augustus_model.g6862.t1
Valid prediction for GlimmerHMM_glimmerT_10453-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_4-snap.2417-T1
Valid prediction for GeneMark_model.17014_t
Valid prediction for GlimmerHMM_glimmerT_10426-T1
Valid prediction for GeneMark_model.17004_t
Valid prediction for snap_scaffold_4-snap.2428-T1
Valid prediction for GeneMark_model.17056_t
Valid prediction for GeneMark_model.17016_t
Valid prediction for snap_scaffold_4-snap.2426-T1
Valid prediction for GeneMark_model.17020_t
Valid prediction for snap_scaffold_4-snap.2423-T1
Valid prediction for GeneMark_model.17008_t
Valid prediction for GeneMark_model.17022_t
Valid prediction for GeneMark_model.17059_t
Valid prediction for GeneMark_model.17043_t
Valid prediction for GlimmerHMM_glimmerT_10431-T1
Valid prediction for snap_scaffold_4-snap.2416-T1
Valid prediction for GeneMark_model.17047_t
Valid prediction for GeneMark_model.17005_t
Valid prediction for GeneMark_model.17024_t
Valid prediction for GeneMark_model.17054_t
Valid prediction for snap_scaffold_4-snap.2422-T1
Valid prediction for Augustus_model.g6856.t1
Valid prediction for GeneMark_model.17013_t
Couldn't classify 12847, 12881
Couldn't classify 13262, 13547
Sorry, prediction pasa_asmbl_42308.p1 fails validation.
(CTG)	 GC	12847-12881	GT	AGG
(GCT)	 AG	13016-13156	GT	AGG
(GGA)	 AG	13262-13547	GG	GAG
-recovered pasa_asmbl_42308.p1, internal, 13016, 13156
Valid prediction for GeneMark_model.17007_t
Valid prediction for snap_scaffold_4-snap.2449-T1
Valid prediction for GeneMark_model.17032_t
Valid prediction for GeneMark_model.17010_t
Valid prediction for snap_scaffold_4-snap.2420-T1
Valid prediction for Augustus_model.g6838.t1
Valid prediction for GeneMark_model.17029_t
Valid prediction for snap_scaffold_4-snap.2441-T1
Valid prediction for GlimmerHMM_glimmerT_10440-T1
Valid prediction for snap_scaffold_4-snap.2425-T1
Valid prediction for GeneMark_model.17052_t
Valid prediction for GlimmerHMM_glimmerT_10451-T1
Valid prediction for GeneMark_model.17018_t
Valid prediction for GeneMark_model.17033_t
Valid prediction for GeneMark_model.17023_t
Valid prediction for GeneMark_model.17050_t
Valid prediction for GlimmerHMM_glimmerT_10428-T1
Valid prediction for GeneMark_model.17031_t
Couldn't classify 10155, 10231
Couldn't classify 12371, 12516
Sorry, prediction pasa_asmbl_41622.p1 fails validation.
(CAC)	 AT	10155-10231	GT	AGG
(TCC)	 AG	10519-10681	GT	AGG
(ATC)	 AG	11686-11800	GT	GGG
(GCG)	 AG	12371-12516	GG	GTG
-recovered pasa_asmbl_41622.p1, internal, 10519, 10681
-recovered pasa_asmbl_41622.p1, internal, 11686, 11800
Valid prediction for GlimmerHMM_glimmerT_10424-T1
Valid prediction for GeneMark_model.17066_t
Valid prediction for snap_scaffold_4-snap.2443-T1
Valid prediction for Augustus_model.g6863.t1
Valid prediction for GlimmerHMM_glimmerT_10454-T1
Valid prediction for snap_scaffold_4-snap.2413-T1
Valid prediction for GlimmerHMM_glimmerT_10444-T1
Valid prediction for snap_scaffold_4-snap.2458-T1
Valid prediction for snap_scaffold_4-snap.2450-T1
Valid prediction for GeneMark_model.17041_t
Valid prediction for GeneMark_model.17064_t
Valid prediction for snap_scaffold_4-snap.2452-T1
Valid prediction for GeneMark_model.17002_t
Valid prediction for GeneMark_model.17058_t
Valid prediction for GeneMark_model.17061_t
Valid prediction for Augustus_model.g6858.t1
Valid prediction for Augustus_model.g6866.t1
Valid prediction for snap_scaffold_4-snap.2418-T1
Valid prediction for GlimmerHMM_glimmerT_10435-T1
Valid prediction for GeneMark_model.17036_t
Valid prediction for snap_scaffold_4-snap.2448-T1
Valid prediction for snap_scaffold_4-snap.2438-T1
Valid prediction for snap_scaffold_4-snap.2447-T1
Valid prediction for GeneMark_model.17034_t
Valid prediction for Augustus_model.g6852.t1
Valid prediction for Augustus_model.g6850.t1
Valid prediction for GlimmerHMM_glimmerT_10443-T1
Valid prediction for GeneMark_model.17039_t
Valid prediction for GlimmerHMM_glimmerT_10449-T1
Valid prediction for GlimmerHMM_glimmerT_10427-T1
Valid prediction for snap_scaffold_4-snap.2431-T1
Valid prediction for Augustus_model.g6841.t1
Valid prediction for snap_scaffold_4-snap.2434-T1
Valid prediction for snap_scaffold_4-snap.2435-T1
Valid prediction for GlimmerHMM_glimmerT_10439-T1
Valid prediction for GeneMark_model.17037_t
Valid prediction for snap_scaffold_4-snap.2460-T1
Valid prediction for CodingQuarry_transcript_49029-T1
Valid prediction for GlimmerHMM_glimmerT_10458-T1
Valid prediction for GeneMark_model.17045_t
Valid prediction for snap_scaffold_4-snap.2456-T1
Valid prediction for GeneMark_model.17015_t
Valid prediction for snap_scaffold_4-snap.2454-T1
Valid prediction for GlimmerHMM_glimmerT_10432-T1
Valid prediction for GlimmerHMM_glimmerT_10441-T1
Valid prediction for Augustus_model.g6842.t1
Valid prediction for Augustus_model.g6844.t1
Valid prediction for snap_scaffold_4-snap.2445-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8425, rend_intergenic: 2913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15831, rend_intergenic: 8428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19149, rend_intergenic: 17053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23347, rend_intergenic: 21396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33002, rend_intergenic: 23580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41810, rend_intergenic: 36330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59367, rend_intergenic: 42812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62182, rend_intergenic: 59425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65569, rend_intergenic: 63162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70389, rend_intergenic: 65584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79360, rend_intergenic: 76640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89450, rend_intergenic: 79651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92798, rend_intergenic: 89469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102832, rend_intergenic: 95441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103342, rend_intergenic: 102998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111852, rend_intergenic: 103347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112501, rend_intergenic: 111946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116953, rend_intergenic: 112824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125683, rend_intergenic: 121239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135546, rend_intergenic: 132612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147031, rend_intergenic: 136113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151713, rend_intergenic: 147567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152404, rend_intergenic: 151729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161913, rend_intergenic: 154665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176914, rend_intergenic: 171796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185284, rend_intergenic: 183734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188346, rend_intergenic: 185544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194380
-exon list size: 1085


building trellis

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31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 52 predictions from path traversal
Error with prediction: snap lend_intergenic: 8425, rend_intergenic: 2913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15831, rend_intergenic: 8428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19149, rend_intergenic: 17053  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23347, rend_intergenic: 21396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33002, rend_intergenic: 23580  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41810, rend_intergenic: 36330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59367, rend_intergenic: 42812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62182, rend_intergenic: 59425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65569, rend_intergenic: 63162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70389, rend_intergenic: 65584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79360, rend_intergenic: 76640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89450, rend_intergenic: 79651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92798, rend_intergenic: 89469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102832, rend_intergenic: 95441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103342, rend_intergenic: 102998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111852, rend_intergenic: 103347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112501, rend_intergenic: 111946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116953, rend_intergenic: 112824  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125683, rend_intergenic: 121239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135546, rend_intergenic: 132612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147031, rend_intergenic: 136113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151713, rend_intergenic: 147567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152404, rend_intergenic: 151729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161913, rend_intergenic: 154665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176914, rend_intergenic: 171796  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185284, rend_intergenic: 183734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188346, rend_intergenic: 185544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support