-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_399

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6817, 6849
Sorry, prediction GeneMark_model.107528_t fails validation.
(ATG)	 CC	6265-6274	GT	CGG
(GGC)	 AG	6577-6694	GT	AGG
(GGA)	 AG	6717-6725	GT	GGG
(AGA)	 AG	6761-6790	GT	AGG
(AGA)	 AG	6817-6849	GT	GAG
-recovered GeneMark_model.107528_t, initial, 6265, 6274
add_exon() Sorry, GeneMark_model.107528_t 6577-6694-terminal-3 is invalid.
-recovered GeneMark_model.107528_t, terminal, 6577, 6694
-recovered GeneMark_model.107528_t, internal, 6577, 6694
-recovered GeneMark_model.107528_t, internal, 6717, 6725
-recovered GeneMark_model.107528_t, internal, 6761, 6790
-recovered GeneMark_model.107528_t, internal, 6817, 6849
Couldn't classify 899, 913
Sorry, prediction GeneMark_model.107527_t fails validation.
(GGG)	 AG	899-913	GT	GTG
(GGG)	 AG	936-1080	GG	GAG
-recovered GeneMark_model.107527_t, terminal, 936, 1080
-recovered GeneMark_model.107527_t, internal, 899, 913

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7314
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support