-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_396

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107518_t
Valid prediction for snap_scaffold_396-snap.2-T1
add_exon() Sorry, snap_scaffold_396-snap.2-T1 3352-3986-terminal-1 is invalid.
Couldn't classify 183, 203
Sorry, prediction GeneMark_model.107516_t fails validation.
(AGA)	 AG	183-203	GT	AGG
(AGG)	 AG	763-777	GT	AAG
(AAA)	 AG	807-881	GT	GAG
(GAA)	 AG	913-1149	GT	GAG
(AGG)	 AG	1170-1248	GA	AAG
add_exon() Sorry, GeneMark_model.107516_t 183-203-terminal-1 is invalid.
-recovered GeneMark_model.107516_t, terminal, 183, 203
-recovered GeneMark_model.107516_t, terminal, 1170, 1248
-recovered GeneMark_model.107516_t, internal, 183, 203
-recovered GeneMark_model.107516_t, internal, 763, 777
-recovered GeneMark_model.107516_t, internal, 807, 881
-recovered GeneMark_model.107516_t, internal, 913, 1149

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107519_t
Valid prediction for snap_scaffold_396-snap.1-T1
Valid prediction for GeneMark_model.107517_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5420, rend_intergenic: 3352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7348
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5420, rend_intergenic: 3352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support