-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_390

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 111, 210
Sorry, prediction Augustus_model.g41063.t1 fails validation.
(CTC)	 AG	111-210	GT	CTG
(CGT)	 AG	756-806	GT	CTG
(GTT)	 AG	991-1383	GT	TGG
(GCA)	 AG	1584-1759	TA	AAT
-recovered Augustus_model.g41063.t1, terminal, 1584, 1759
-recovered Augustus_model.g41063.t1, internal, 111, 210
-recovered Augustus_model.g41063.t1, internal, 756, 806
-recovered Augustus_model.g41063.t1, internal, 991, 1383
Valid prediction for GeneMark_model.107502_t
Valid prediction for GlimmerHMM_glimmerT_61786-T1
Couldn't classify 5795, 5908
Sorry, prediction GeneMark_model.107503_t fails validation.
(ATG)	 AG	4888-4895	GT	GAG
(TGG)	 AG	5116-5169	GT	GAG
(ATT)	 AG	5196-5213	GT	GGG
(TTC)	 AG	5236-5244	GT	AGG
(TGA)	 AG	5288-5338	GT	GAG
(ACC)	 AG	5795-5908	GT	CTG
-recovered GeneMark_model.107503_t, initial, 4888, 4895
-recovered GeneMark_model.107503_t, terminal, 4888, 4895
-recovered GeneMark_model.107503_t, internal, 4888, 4895
-recovered GeneMark_model.107503_t, internal, 5116, 5169
-recovered GeneMark_model.107503_t, internal, 5196, 5213
-recovered GeneMark_model.107503_t, internal, 5236, 5244
-recovered GeneMark_model.107503_t, internal, 5288, 5338
-recovered GeneMark_model.107503_t, internal, 5795, 5908

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7297, 7367
Sorry, prediction snap_scaffold_390-snap.1-T1 fails validation.
(ATG)	 AA	5066-5120	GT	AAG
(TAG)	 AG	5736-5815	GT	GGG
(ATG)	 AG	7297-7367	GT	ATG
-recovered snap_scaffold_390-snap.1-T1, initial, 5066, 5120
-recovered snap_scaffold_390-snap.1-T1, initial, 7297, 7367
-recovered snap_scaffold_390-snap.1-T1, internal, 5736, 5815
-recovered snap_scaffold_390-snap.1-T1, internal, 7297, 7367

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7442
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support