-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_388

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 840, 1037
Sorry, prediction snap_scaffold_388-snap.1-T1 fails validation.
(TCT)	 AG	840-1037	GT	TAG
(CTC)	 AG	4115-4248	GA	GAG
-recovered snap_scaffold_388-snap.1-T1, terminal, 4115, 4248
-recovered snap_scaffold_388-snap.1-T1, internal, 840, 1037
Valid prediction for Augustus_model.g41062.t1
Valid prediction for GeneMark_model.107495_t
Couldn't classify 6850, 6871
Sorry, prediction GeneMark_model.107498_t fails validation.
(ATG)	 AG	6567-6682	GT	GGG
(ACA)	 AG	6725-6733	GT	GAG
(GAC)	 AG	6797-6809	GT	CTG
(GAC)	 AG	6850-6871	GT	TGG
-recovered GeneMark_model.107498_t, initial, 6567, 6682
-recovered GeneMark_model.107498_t, internal, 6567, 6682
-recovered GeneMark_model.107498_t, internal, 6725, 6733
-recovered GeneMark_model.107498_t, internal, 6797, 6809
-recovered GeneMark_model.107498_t, internal, 6850, 6871
Couldn't classify 17, 72
Sorry, prediction GeneMark_model.107493_t fails validation.
(GGG)	 AG	17-72	GT	GGG
(AGA)	 AG	128-244	GT	TGG
(TGG)	 AG	267-302	GT	ATG
(TCA)	 AG	328-363	GT	AAG
(ATC)	 AG	853-902	GT	AGG
(CTC)	 AG	995-1026	GG	GAG
-recovered GeneMark_model.107493_t, terminal, 995, 1026
-recovered GeneMark_model.107493_t, internal, 17, 72
-recovered GeneMark_model.107493_t, internal, 128, 244
-recovered GeneMark_model.107493_t, internal, 267, 302
-recovered GeneMark_model.107493_t, internal, 328, 363
-recovered GeneMark_model.107493_t, internal, 853, 902
Valid prediction for GeneMark_model.107496_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107497_t
Valid prediction for snap_scaffold_388-snap.3-T1
add_exon() Sorry, snap_scaffold_388-snap.3-T1 837-1033-terminal-1 is invalid.
Valid prediction for GeneMark_model.107494_t
Valid prediction for GlimmerHMM_glimmerT_61784-T1
Valid prediction for snap_scaffold_388-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4248, rend_intergenic: 937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 7452
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 4248, rend_intergenic: 937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support