-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_386

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4515, 5081
Sorry, prediction pasa_asmbl_41018.p1 fails validation.
(TGG)	 AG	4515-5081	AT	AGA
Valid prediction for GlimmerHMM_glimmerT_61779-T1
Valid prediction for GlimmerHMM_glimmerT_61781-T1
Couldn't classify 6525, 6651
Sorry, prediction snap_scaffold_386-snap.4-T1 fails validation.
(ATG)	 GG	6316-6452	GT	AAG
(AGA)	 AG	6525-6651	GT	GGG
-recovered snap_scaffold_386-snap.4-T1, initial, 6316, 6452
-recovered snap_scaffold_386-snap.4-T1, internal, 6525, 6651
Valid prediction for snap_scaffold_386-snap.1-T1
Couldn't classify 1314, 1328
Sorry, prediction GeneMark_model.107489_t fails validation.
(AGC)	 AG	1314-1328	GT	TTG
(ATT)	 AG	1374-1574	GT	AGG
(GGG)	 AG	1617-1712	GT	GGG
(TCA)	 AG	1737-1902	GC	GGG
(CAT)	 AG	2594-2661	GT	GAG
(GCC)	 AG	2685-2703	GT	TGG
(CAC)	 AG	2781-2914	GT	CAG
(GCG)	 AG	3397-3424	GT	AGG
(GCG)	 AG	3446-3672	GC	GAG
(AGC)	 AG	3696-4211	GT	ACG
(GTC)	 AG	4239-4407	GT	GGG
(CGT)	 AG	4443-5072	GT	GGG
(TCT)	 AG	5102-6208	GT	AGG
(CCG)	 AG	6248-6441	GT	GTG
(GGC)	 AG	6543-6647	GT	GGG
(AAG)	 AG	6758-6763	GT	AAG
(ACT)	 AG	6784-6814	GC	AAG
-recovered GeneMark_model.107489_t, terminal, 2594, 2661
-recovered GeneMark_model.107489_t, terminal, 6784, 6814
-recovered GeneMark_model.107489_t, internal, 1314, 1328
-recovered GeneMark_model.107489_t, internal, 1374, 1574
-recovered GeneMark_model.107489_t, internal, 1617, 1712
-recovered GeneMark_model.107489_t, internal, 1737, 1902
-recovered GeneMark_model.107489_t, internal, 2594, 2661
-recovered GeneMark_model.107489_t, internal, 2685, 2703
-recovered GeneMark_model.107489_t, internal, 2781, 2914
-recovered GeneMark_model.107489_t, internal, 3397, 3424
-recovered GeneMark_model.107489_t, internal, 3446, 3672
-recovered GeneMark_model.107489_t, internal, 3696, 4211
-recovered GeneMark_model.107489_t, internal, 4239, 4407
-recovered GeneMark_model.107489_t, internal, 4443, 5072
-recovered GeneMark_model.107489_t, internal, 5102, 6208
-recovered GeneMark_model.107489_t, internal, 6248, 6441
-recovered GeneMark_model.107489_t, internal, 6543, 6647
-recovered GeneMark_model.107489_t, internal, 6758, 6763
-recovered GeneMark_model.107489_t, internal, 6784, 6814
Valid prediction for Augustus_model.g41059.t1
Valid prediction for Augustus_model.g41060.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_386-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61780-T1
Valid prediction for snap_scaffold_386-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7491
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support