-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_384

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6783, 6917
Sorry, prediction snap_scaffold_384-snap.1-T1 fails validation.
(ATG)	 GG	3792-3927	GT	AAG
(GAG)	 AG	5776-6172	GT	AGG
(GGG)	 AG	6203-6502	GT	TAG
(CCC)	 AG	6783-6917	GT	AGG
-recovered snap_scaffold_384-snap.1-T1, initial, 3792, 3927
-recovered snap_scaffold_384-snap.1-T1, internal, 5776, 6172
-recovered snap_scaffold_384-snap.1-T1, internal, 6203, 6502
-recovered snap_scaffold_384-snap.1-T1, internal, 6783, 6917
Valid prediction for GlimmerHMM_glimmerT_61777-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61777-T1 5776-6176-terminal-1 is invalid.
Couldn't classify 6788, 6917
Sorry, prediction GeneMark_model.107486_t fails validation.
(ATG)	 AA	5109-5130	GT	TGG
(GTC)	 AG	5881-6049	GT	AGG
(AGA)	 AG	6080-6172	GT	AGG
(GAG)	 AG	6196-6315	GC	GAG
(AGG)	 AG	6348-6502	GT	TAG
(CCC)	 AG	6788-6917	GT	AGG
-recovered GeneMark_model.107486_t, initial, 5109, 5130
-recovered GeneMark_model.107486_t, internal, 5881, 6049
-recovered GeneMark_model.107486_t, internal, 6080, 6172
-recovered GeneMark_model.107486_t, internal, 6196, 6315
-recovered GeneMark_model.107486_t, internal, 6348, 6502
-recovered GeneMark_model.107486_t, internal, 6788, 6917

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6299, 6414
Sorry, prediction GeneMark_model.107485_t fails validation.
(ATG)	 TC	2562-2572	GT	GAG
(AGG)	 AG	4713-4820	GT	GGG
(GGA)	 AG	4844-4897	GT	GGG
(GGT)	 AG	4924-4932	GT	AGG
(GGT)	 AG	4958-4966	GT	AGG
(GGT)	 AG	4992-5000	GT	GGG
(GGA)	 AG	5028-5048	GT	ATG
(GAG)	 AG	5090-5230	GT	GAG
(AGT)	 AG	5258-5307	GT	AAG
(TAG)	 AG	5910-5943	GT	GGG
(GAA)	 AG	6031-6039	GT	GGG
(GGG)	 AG	6063-6086	GT	GAG
(GTG)	 AG	6134-6277	GT	AGG
(GAA)	 AG	6299-6414	GT	AGG
-recovered GeneMark_model.107485_t, initial, 2562, 2572
-recovered GeneMark_model.107485_t, internal, 4713, 4820
-recovered GeneMark_model.107485_t, internal, 4844, 4897
-recovered GeneMark_model.107485_t, internal, 4924, 4932
-recovered GeneMark_model.107485_t, internal, 4958, 4966
-recovered GeneMark_model.107485_t, internal, 4992, 5000
-recovered GeneMark_model.107485_t, internal, 5028, 5048
-recovered GeneMark_model.107485_t, internal, 5090, 5230
-recovered GeneMark_model.107485_t, internal, 5258, 5307
-recovered GeneMark_model.107485_t, internal, 5910, 5943
-recovered GeneMark_model.107485_t, internal, 6031, 6039
-recovered GeneMark_model.107485_t, internal, 6063, 6086
-recovered GeneMark_model.107485_t, internal, 6134, 6277
-recovered GeneMark_model.107485_t, internal, 6299, 6414

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7504
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support