-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_383

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1714, 1786
Sorry, prediction snap_scaffold_383-snap.1-T1 fails validation.
(CCC)	 AG	1714-1786	GT	CAG
(TCT)	 AG	1950-2081	GT	AAG
-recovered snap_scaffold_383-snap.1-T1, terminal, 1950, 2081
-recovered snap_scaffold_383-snap.1-T1, internal, 1714, 1786
-recovered snap_scaffold_383-snap.1-T1, internal, 1950, 2081

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 7204, 7210
Sorry, prediction GeneMark_model.107483_t fails validation.
(ATG)	 TC	5730-5812	GT	GGG
(GTA)	 AG	5856-5868	GT	GGG
(GCT)	 AG	6209-6240	GT	GGG
(AGA)	 AG	7174-7179	GT	AGG
(TGA)	 AG	7204-7210	GT	CAG
-recovered GeneMark_model.107483_t, initial, 5730, 5812
-recovered GeneMark_model.107483_t, internal, 5856, 5868
-recovered GeneMark_model.107483_t, internal, 6209, 6240
-recovered GeneMark_model.107483_t, internal, 7174, 7179
-recovered GeneMark_model.107483_t, internal, 7204, 7210
Couldn't classify 34, 54
Sorry, prediction GeneMark_model.107484_t fails validation.
(AGC)	 AG	34-54	GT	GAG
(GGA)	 AG	118-132	GT	GAG
(TGA)	 AG	227-271	GT	GAG
(AAA)	 AG	305-322	GT	GAG
(CGA)	 AG	639-668	GC	AGG
(AGA)	 AG	689-713	AG	GAA
-recovered GeneMark_model.107484_t, terminal, 689, 713
-recovered GeneMark_model.107484_t, internal, 34, 54
-recovered GeneMark_model.107484_t, internal, 118, 132
-recovered GeneMark_model.107484_t, internal, 227, 271
-recovered GeneMark_model.107484_t, internal, 305, 322
-recovered GeneMark_model.107484_t, internal, 639, 668

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 7505
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support